Detailed information NTG0353616

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: GO004_RS12395
• Genome accession: NZ_CP046591
• Coordinates: 2380080..2381201 (-)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain R31
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2375080..2386201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO004_RS12375 (GO004_12360)	znuC	2375588..2376283 (-)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-
GO004_RS12380 (GO004_12365)	znuA	2376339..2377298 (-)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
GO004_RS12385 (GO004_12370)	ycdG	2377486..2379171 (-)	1686	WP_195727655.1	alpha-glucosidase	-
GO004_RS12390 (GO004_12375)	ycdF	2379196..2379972 (-)	777	WP_003234739.1	SDR family oxidoreductase	-
GO004_RS12395 (GO004_12380)	rapF	2380080..2381201 (-)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
GO004_RS12400 (GO004_12385)	cwlK	2381324..2381827 (+)	504	WP_021481861.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
GO004_RS12405 (GO004_12390)	ycdC	2381835..2383196 (-)	1362	WP_163260164.1	YcdB/YcdC domain-containing protein	-
GO004_RS12410 (GO004_12395)	ycdB	2383383..2384801 (-)	1419	WP_085186706.1	YcdB/YcdC domain-containing protein	-
GO004_RS12415 (GO004_12400)	-	2384975..2385106 (+)	132	WP_003246334.1	hypothetical protein	-
GO004_RS12420 (GO004_12405)	ycdA	2385129..2386193 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=353616 GO004_RS12395 WP_003234740.1 2380080..2381201(-) (rapF) [Bacillus subtilis strain R31]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=353616 GO004_RS12395 WP_003234740.1 2380080..2381201(-) (rapF) [Bacillus subtilis strain R31]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATTAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTAACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405