Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GO004_RS11650 Genome accession   NZ_CP046591
Coordinates   2209130..2209564 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain R31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204130..2214564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS11635 (GO004_11625) epsK 2204759..2205610 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  GO004_RS11640 (GO004_11630) ephJ 2205591..2206679 (-) 1089 WP_003246551.1 lipoprotein -
  GO004_RS11645 (GO004_11635) topB 2206882..2209065 (-) 2184 WP_029317313.1 DNA topoisomerase III -
  GO004_RS11650 (GO004_11640) lrpC 2209130..2209564 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GO004_RS11655 (GO004_11645) ydzA 2209749..2210039 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GO004_RS11660 (GO004_11650) amj 2210084..2210893 (-) 810 WP_032722918.1 lipid II flippase Amj -
  GO004_RS11665 (GO004_11655) ydaG 2211399..2211821 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  GO004_RS11670 (GO004_11660) ydaF 2211899..2212450 (-) 552 WP_014478866.1 GNAT family protein -
  GO004_RS11675 (GO004_11665) lyxE 2212538..2213041 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  GO004_RS11680 (GO004_11670) ydaD 2213057..2213917 (-) 861 WP_032722917.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=353605 GO004_RS11650 WP_003246585.1 2209130..2209564(-) (lrpC) [Bacillus subtilis strain R31]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=353605 GO004_RS11650 WP_003246585.1 2209130..2209564(-) (lrpC) [Bacillus subtilis strain R31]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1