Detailed information NTG0353602

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GO004_RS10385
• Genome accession: NZ_CP046591
• Coordinates: 1959760..1960887 (+)
• Length: 375 a.a.
• NCBI ID: WP_088467555.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain R31
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1954760..1965887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO004_RS10360 (GO004_10340)	-	1955449..1956369 (-)	921	WP_046380836.1	DUF5655 domain-containing protein	-
GO004_RS10365 (GO004_10345)	-	1956382..1956720 (-)	339	WP_021481280.1	hypothetical protein	-
GO004_RS10370 (GO004_10350)	-	1956887..1958773 (+)	1887	WP_172480932.1	T7SS effector LXG polymorphic toxin	-
GO004_RS10375 (GO004_10355)	-	1958786..1959181 (+)	396	WP_048655144.1	immunity 22 family protein	-
GO004_RS10380 (GO004_10360)	-	1959266..1959569 (+)	304	Protein_2067	hypothetical protein	-
GO004_RS10385 (GO004_10365)	rapC	1959760..1960887 (+)	1128	WP_088467555.1	Rap family tetratricopeptide repeat protein	Regulator
GO004_RS10390 (GO004_10370)	-	1960877..1961074 (+)	198	WP_088467554.1	hypothetical protein	-
GO004_RS10395 (GO004_10375)	-	1961166..1962377 (-)	1212	WP_172480933.1	restriction endonuclease	-
GO004_RS10400 (GO004_10380)	-	1962570..1964300 (+)	1731	WP_172480934.1	hypothetical protein	-
GO004_RS10405 (GO004_10385)	-	1964370..1964810 (+)	441	WP_250541140.1	very short patch repair endonuclease	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44348.03 Da
• Isoelectric Point: 6.6866

>NTDB_id=353602 GO004_RS10385 WP_088467555.1 1959760..1960887(+) (rapC) [Bacillus subtilis strain R31]
MGTISSPHVGIKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPSEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKIGELTKAAK
YMEQSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDNLFKIMFEGLQALFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQILRGDCLYEI

Nucleotide

• Length: 1128 bp

>NTDB_id=353602 GO004_RS10385 WP_088467555.1 1959760..1960887(+) (rapC) [Bacillus subtilis strain R31]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATAAAAATTAATGAATGGAACCGGCATATTCAAAAGTTTAATGTGACAGA
TGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCGGATGAAATCG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACACACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATTGCAGGAAACTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTTGAACAGGCACTAAAAGGCGCACGGCTTCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATTGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGCAATCGATTCTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATA
ATCTATTTAAAATTATGTTTGAAGGATTGCAGGCGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCTGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.425	100	0.419
rapF	Bacillus subtilis subsp. subtilis str. 168	38.786	100	0.392