Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GO004_RS05050 Genome accession   NZ_CP046591
Coordinates   938274..938705 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain R31     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 933274..943705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS05040 (GO004_05010) hexA 934759..937335 (-) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene
  GO004_RS05045 (GO004_05015) cotE 937468..938013 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  GO004_RS05050 (GO004_05020) ymcA 938274..938705 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GO004_RS05055 (GO004_05025) miaB 938707..940236 (-) 1530 WP_195727857.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GO004_RS05060 (GO004_05030) kbl 940384..941562 (-) 1179 WP_014664025.1 glycine C-acetyltransferase -
  GO004_RS05065 (GO004_05035) tdh 941575..942618 (-) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  GO004_RS05070 (GO004_05040) spoVS 942884..943144 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=353554 GO004_RS05050 WP_003231834.1 938274..938705(-) (ymcA) [Bacillus subtilis strain R31]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=353554 GO004_RS05050 WP_003231834.1 938274..938705(-) (ymcA) [Bacillus subtilis strain R31]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1