Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GO004_RS03100 Genome accession   NZ_CP046591
Coordinates   523647..525422 (+) Length   591 a.a.
NCBI ID   WP_064911726.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 518647..530422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS03050 (GO004_03035) yozC 519093..519296 (+) 204 WP_003231245.1 DUF6501 family protein -
  GO004_RS03055 (GO004_03040) yozO 519650..519994 (+) 345 WP_003220141.1 PH domain-containing protein -
  GO004_RS03060 (GO004_03045) - 520074..520307 (-) 234 WP_003231251.1 hypothetical protein -
  GO004_RS03065 (GO004_03050) - 520312..520575 (-) 264 WP_004399338.1 hypothetical protein -
  GO004_RS03070 (GO004_03055) yocM 520642..521118 (+) 477 WP_064911728.1 salt stress-responsive protein YocM -
  GO004_RS03075 (GO004_03060) - 521105..521332 (-) 228 WP_014480021.1 hypothetical protein -
  GO004_RS03080 (GO004_03065) - 521410..521742 (+) 333 WP_064911727.1 hypothetical protein -
  GO004_RS03085 (GO004_03070) stpP 521815..522306 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  GO004_RS03090 (GO004_03075) azoJ 522457..523083 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  GO004_RS03100 (GO004_03085) recQ 523647..525422 (+) 1776 WP_064911726.1 DNA helicase RecQ Machinery gene
  GO004_RS03105 (GO004_03090) walN 525670..526533 (+) 864 WP_003231267.1 3D domain-containing protein -
  GO004_RS03110 (GO004_03095) desR 527126..527725 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  GO004_RS03115 (GO004_03100) desK 527744..528856 (-) 1113 WP_064911725.1 two-component sensor histidine kinase DesK -
  GO004_RS03120 (GO004_03105) desE 528976..530034 (-) 1059 WP_195727832.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67349.89 Da        Isoelectric Point: 6.3539

>NTDB_id=353548 GO004_RS03100 WP_064911726.1 523647..525422(+) (recQ) [Bacillus subtilis strain R31]
MLHRAQSLLAHFFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNHVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEICDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=353548 GO004_RS03100 WP_064911726.1 523647..525422(+) (recQ) [Bacillus subtilis strain R31]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTTTTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAAGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAACCATGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGGTTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAGCATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTATTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAAGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCTGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGCGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(403-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993