Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GOQ07_RS15855 Genome accession   NZ_CP046554
Coordinates   3316580..3316942 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 19WIARLN011_full     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3311580..3321942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ07_RS15845 (GOQ07_15700) - 3313858..3315936 (-) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -
  GOQ07_RS15850 (GOQ07_15705) - 3315983..3316519 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  GOQ07_RS15855 (GOQ07_15710) pilH 3316580..3316942 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  GOQ07_RS15860 (GOQ07_15715) pilG 3316966..3317349 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  GOQ07_RS15865 (GOQ07_15720) - 3317632..3318270 (+) 639 WP_031949909.1 hypothetical protein -
  GOQ07_RS15870 (GOQ07_15725) - 3318330..3319445 (+) 1116 WP_001260814.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=353504 GOQ07_RS15855 WP_000101096.1 3316580..3316942(-) (pilH) [Acinetobacter baumannii strain 19WIARLN011_full]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=353504 GOQ07_RS15855 WP_000101096.1 3316580..3316942(-) (pilH) [Acinetobacter baumannii strain 19WIARLN011_full]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTAG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment