Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABK1_RS10610 | Genome accession | NC_017162 |
| Coordinates | 2181873..2182253 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | A0ABX6CGB7 |
| Organism | Acinetobacter baumannii 1656-2 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2176873..2187253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABK1_RS10580 (ABK1_2063) | kdsB | 2177776..2178537 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABK1_RS10585 (ABK1_2064) | - | 2178549..2179529 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABK1_RS10590 (ABK1_2065) | - | 2179541..2179882 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABK1_RS10595 (ABK1_2066) | - | 2179900..2180673 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABK1_RS10600 (ABK1_2067) | - | 2180711..2181319 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABK1_RS10605 (ABK1_2068) | - | 2181329..2181883 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABK1_RS10610 (ABK1_2069) | xcpV | 2181873..2182253 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABK1_RS10615 (ABK1_2070) | xcpW | 2182253..2182954 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABK1_RS10620 (ABK1_2071) | gspK | 2182954..2183913 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABK1_RS10625 (ABK1_2072) | - | 2184144..2184740 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABK1_RS10630 (ABK1_2073) | ung | 2184791..2185504 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABK1_RS10635 (ABK1_2074) | - | 2185501..2186625 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABK1_RS10640 (ABK1_2075) | tadA | 2186632..2187135 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=35348 ABK1_RS10610 WP_000836911.1 2181873..2182253(+) (xcpV) [Acinetobacter baumannii 1656-2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=35348 ABK1_RS10610 WP_000836911.1 2181873..2182253(+) (xcpV) [Acinetobacter baumannii 1656-2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |