Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECO103_RS05315 Genome accession   NC_013353
Coordinates   1107249..1107878 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O103:H2 str. 12009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102249..1112878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO103_RS05290 (ECO103_1001) ycbZ 1102650..1104410 (-) 1761 WP_000156526.1 AAA family ATPase -
  ECO103_RS05295 (ECO103_1002) matP 1104596..1105048 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECO103_RS05300 (ECO103_1003) ompA 1105124..1106164 (-) 1041 WP_000750416.1 porin OmpA -
  ECO103_RS05310 (ECO103_1004) sulA 1106521..1107030 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECO103_RS05315 (ECO103_1005) sxy/tfoX 1107249..1107878 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECO103_RS05320 (ECO103_1006) yccS 1107841..1110003 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ECO103_RS05325 (ECO103_1007) yccF 1110013..1110459 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ECO103_RS05330 (ECO103_1008) helD 1110582..1112636 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=35336 ECO103_RS05315 WP_000839153.1 1107249..1107878(+) (sxy/tfoX) [Escherichia coli O103:H2 str. 12009]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=35336 ECO103_RS05315 WP_000839153.1 1107249..1107878(+) (sxy/tfoX) [Escherichia coli O103:H2 str. 12009]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment