Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GOQ08_RS10335 Genome accession   NZ_CP046549
Coordinates   2162096..2162731 (-) Length   211 a.a.
NCBI ID   WP_032043173.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 19WIARLN022_full     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157096..2167731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ08_RS10310 (GOQ08_10235) - 2157152..2158132 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  GOQ08_RS10315 (GOQ08_10240) kdsB 2158144..2158905 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GOQ08_RS10320 (GOQ08_10245) lpxK 2158915..2159925 (-) 1011 WP_032058432.1 tetraacyldisaccharide 4'-kinase -
  GOQ08_RS10325 (GOQ08_10250) msbA 2159928..2161655 (-) 1728 WP_032058433.1 lipid A export permease/ATP-binding protein MsbA -
  GOQ08_RS10330 (GOQ08_10255) - 2161652..2162080 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  GOQ08_RS10335 (GOQ08_10260) exbB 2162096..2162731 (-) 636 WP_032043173.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GOQ08_RS10340 (GOQ08_10265) - 2162781..2163668 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  GOQ08_RS10345 (GOQ08_10270) - 2163665..2164447 (-) 783 WP_000057212.1 ParA family protein -
  GOQ08_RS10350 (GOQ08_10275) rsmG 2164469..2165101 (-) 633 WP_000553197.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GOQ08_RS10355 (GOQ08_10280) murU 2165189..2165878 (-) 690 WP_000646457.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GOQ08_RS10360 (GOQ08_10285) - 2165878..2166891 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23225.12 Da        Isoelectric Point: 6.4861

>NTDB_id=353337 GOQ08_RS10335 WP_032043173.1 2162096..2162731(-) (exbB) [Acinetobacter baumannii strain 19WIARLN022_full]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKILMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=353337 GOQ08_RS10335 WP_032043173.1 2162096..2162731(-) (exbB) [Acinetobacter baumannii strain 19WIARLN022_full]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAATACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393