Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GOQ08_RS03235 Genome accession   NZ_CP046549
Coordinates   658990..659352 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 19WIARLN022_full     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 653990..664352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ08_RS03220 (GOQ08_03210) - 656487..657602 (-) 1116 WP_001260814.1 efflux RND transporter periplasmic adaptor subunit -
  GOQ08_RS03225 (GOQ08_03215) - 657662..658300 (-) 639 WP_031949909.1 hypothetical protein -
  GOQ08_RS03230 (GOQ08_03220) pilG 658583..658966 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  GOQ08_RS03235 (GOQ08_03225) pilH 658990..659352 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  GOQ08_RS03240 (GOQ08_03230) - 659413..659949 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  GOQ08_RS03245 (GOQ08_03235) - 659996..662074 (+) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=353316 GOQ08_RS03235 WP_000101096.1 658990..659352(+) (pilH) [Acinetobacter baumannii strain 19WIARLN022_full]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=353316 GOQ08_RS03235 WP_000101096.1 658990..659352(+) (pilH) [Acinetobacter baumannii strain 19WIARLN022_full]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTAG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment