Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GOE21_RS23490 Genome accession   NZ_CP046539
Coordinates   4799368..4799883 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain FHI_NMBU_10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4794368..4804883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOE21_RS23445 (GOE21_23440) csrA 4794955..4795140 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GOE21_RS23475 (GOE21_23470) yqaB 4796598..4797164 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GOE21_RS23480 (GOE21_23475) yqaA 4797161..4797589 (+) 429 WP_001287454.1 YqaA family protein -
  GOE21_RS23485 (GOE21_23480) gshA 4797662..4799218 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GOE21_RS23490 (GOE21_23485) luxS 4799368..4799883 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  GOE21_RS23495 (GOE21_23490) emrB 4799947..4801485 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GOE21_RS23500 (GOE21_23495) emrA 4801502..4802674 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GOE21_RS23505 (GOE21_23500) emrR 4802801..4803331 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GOE21_RS23510 (GOE21_23505) ygaH 4803422..4803757 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GOE21_RS23515 (GOE21_23510) ygaZ 4803747..4804484 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=353209 GOE21_RS23490 WP_001130210.1 4799368..4799883(+) (luxS) [Escherichia coli strain FHI_NMBU_10]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=353209 GOE21_RS23490 WP_001130210.1 4799368..4799883(+) (luxS) [Escherichia coli strain FHI_NMBU_10]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737