Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GOE21_RS10840 Genome accession   NZ_CP046539
Coordinates   2146459..2147064 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FHI_NMBU_10     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2141459..2152064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOE21_RS10820 (GOE21_10830) aes 2141496..2142455 (+) 960 WP_032362543.1 acetyl esterase -
  GOE21_RS10825 (GOE21_10835) hemH 2142452..2143414 (-) 963 WP_001250088.1 ferrochelatase -
  GOE21_RS10830 (GOE21_10840) adk 2143650..2144294 (-) 645 WP_001220233.1 adenylate kinase -
  GOE21_RS10835 (GOE21_10845) htpG 2144475..2146349 (-) 1875 WP_086257666.1 molecular chaperone HtpG -
  GOE21_RS10840 (GOE21_10850) recR 2146459..2147064 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GOE21_RS10845 (GOE21_10855) ybaB 2147064..2147393 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GOE21_RS10850 (GOE21_10860) dnaX 2147446..2149377 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  GOE21_RS10855 (GOE21_10865) apt 2149506..2150057 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GOE21_RS10860 (GOE21_10870) ybaN 2150210..2150587 (-) 378 WP_001188905.1 DUF454 family protein -
  GOE21_RS10865 (GOE21_10875) priC 2150657..2151184 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  GOE21_RS10870 (GOE21_10880) rsmS 2151198..2151359 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GOE21_RS27090 - 2151412..2151510 (-) 99 Protein_2155 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=353156 GOE21_RS10840 WP_001195025.1 2146459..2147064(-) (recR) [Escherichia coli strain FHI_NMBU_10]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=353156 GOE21_RS10840 WP_001195025.1 2146459..2147064(-) (recR) [Escherichia coli strain FHI_NMBU_10]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443