Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GOD87_RS08000 Genome accession   NZ_CP046536
Coordinates   1679525..1680160 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XL380     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674525..1685160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS07975 (GOD87_07975) - 1675365..1676378 (+) 1014 WP_057092772.1 aminoglycoside phosphotransferase family protein -
  GOD87_RS07980 (GOD87_07980) murU 1676378..1677067 (+) 690 WP_057092774.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GOD87_RS07985 (GOD87_07985) rsmG 1677155..1677787 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GOD87_RS07990 (GOD87_07990) - 1677809..1678591 (+) 783 WP_000057212.1 ParA family protein -
  GOD87_RS07995 (GOD87_07995) - 1678588..1679475 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  GOD87_RS08000 (GOD87_08000) exbB 1679525..1680160 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GOD87_RS08005 (GOD87_08005) - 1680176..1680604 (+) 429 WP_000669684.1 ExbD/TolR family protein -
  GOD87_RS08010 (GOD87_08010) msbA 1680601..1682328 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  GOD87_RS08015 (GOD87_08015) lpxK 1682331..1683341 (+) 1011 WP_000050450.1 tetraacyldisaccharide 4'-kinase -
  GOD87_RS08020 (GOD87_08020) kdsB 1683351..1684112 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GOD87_RS08025 (GOD87_08025) - 1684124..1685104 (+) 981 WP_057092777.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=353090 GOD87_RS08000 WP_000264035.1 1679525..1680160(+) (exbB) [Acinetobacter baumannii strain XL380]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=353090 GOD87_RS08000 WP_000264035.1 1679525..1680160(+) (exbB) [Acinetobacter baumannii strain XL380]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393