Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPELS_RS05960 Genome accession   NC_017063
Coordinates   1257873..1258922 (+) Length   349 a.a.
NCBI ID   WP_000115507.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252873..1263922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS05945 - 1253802..1255044 (-) 1243 Protein_1153 DUF874 family protein -
  HPELS_RS05950 (HPELS_06180) asd 1255456..1256496 (-) 1041 WP_000860925.1 aspartate-semialdehyde dehydrogenase -
  HPELS_RS05955 (HPELS_06185) hisS 1256483..1257811 (-) 1329 WP_000632464.1 histidine--tRNA ligase -
  HPELS_RS05960 (HPELS_06190) waaF 1257873..1258922 (+) 1050 WP_000115507.1 lipopolysaccharide heptosyltransferase II Regulator
  HPELS_RS05965 (HPELS_06195) - 1259114..1259422 (-) 309 WP_411155718.1 hypothetical protein -
  HPELS_RS05970 (HPELS_06200) - 1259562..1260551 (+) 990 WP_001187426.1 aldo/keto reductase -
  HPELS_RS05975 (HPELS_06205) fusA 1261086..1263164 (-) 2079 WP_000101858.1 elongation factor G -
  HPELS_RS05980 (HPELS_06210) rpsG 1263176..1263643 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39382.04 Da        Isoelectric Point: 9.5596

>NTDB_id=35308 HPELS_RS05960 WP_000115507.1 1257873..1258922(+) (waaF) [Helicobacter pylori ELS37]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFVLVGPTIACELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDTIVSEEILKLTKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHALLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=35308 HPELS_RS05960 WP_000115507.1 1257873..1258922(+) (waaF) [Helicobacter pylori ELS37]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTGTCTTAGTGGGCCCAACCATTGCGTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAATCTCCCCACTCACACCCCAAACACCCCCAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACACTATCGTTTCTGAAGAAATTTTAAAACTCACCAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTAAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACGCTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.192

98.281

0.375

Multiple sequence alignment