Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   E4T55_RS08230 Genome accession   NZ_CP038273
Coordinates   1825884..1826537 (-) Length   217 a.a.
NCBI ID   WP_058501051.1    Uniprot ID   A0A0W0WGI7
Organism   Legionella israelensis strain Bercovier 4     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820884..1831537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T55_RS08200 (E4T55_08200) wrbA 1821108..1821713 (+) 606 WP_316409766.1 NAD(P)H:quinone oxidoreductase -
  E4T55_RS08205 (E4T55_08205) - 1821752..1822687 (+) 936 WP_058501046.1 glutathione S-transferase family protein -
  E4T55_RS08210 (E4T55_08210) - 1823016..1823357 (+) 342 WP_058501047.1 hypothetical protein -
  E4T55_RS08215 (E4T55_08215) - 1823428..1824030 (-) 603 WP_058501048.1 short chain dehydrogenase -
  E4T55_RS08220 (E4T55_08220) - 1824110..1824883 (+) 774 WP_172461019.1 SDR family NAD(P)-dependent oxidoreductase -
  E4T55_RS08225 (E4T55_08225) - 1824968..1825453 (+) 486 WP_058501050.1 YajQ family cyclic di-GMP-binding protein -
  E4T55_RS08230 (E4T55_08230) rocC 1825884..1826537 (-) 654 WP_058501051.1 ProQ/FinO family protein Regulator
  E4T55_RS08235 (E4T55_08235) - 1826865..1827065 (+) 201 WP_082636480.1 hypothetical protein -
  E4T55_RS08240 (E4T55_08240) dapB 1827096..1827827 (+) 732 WP_058501052.1 4-hydroxy-tetrahydrodipicolinate reductase -
  E4T55_RS08245 (E4T55_08245) - 1827918..1830416 (-) 2499 WP_058501053.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24897.26 Da        Isoelectric Point: 10.5785

>NTDB_id=353068 E4T55_RS08230 WP_058501051.1 1825884..1826537(-) (rocC) [Legionella israelensis strain Bercovier 4]
MRKQELHPRTAVINRSQKNKSKQARLNALRWLADRFPEAFNNKLRIRPLKKGIMNDLLEYAEEAAEAGISKSKLREAVIL
FTRRIDYLACLKAQETRIDLHGNAIDKVSSEEAERAAIKIKRRVEKSARNARKTNAKAPMEPYYYNNSTDHHDSYRSSAE
EHEFPVYPSRSSYNNAGQNSKNPSVVIKHKASKSYDPEAVARLKEKLGLSKRESTTK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=353068 E4T55_RS08230 WP_058501051.1 1825884..1826537(-) (rocC) [Legionella israelensis strain Bercovier 4]
ATGAGAAAACAGGAACTGCACCCCCGAACTGCAGTGATCAACCGAAGCCAAAAAAATAAATCAAAACAGGCTCGTTTAAA
CGCCTTGCGATGGCTTGCCGATCGGTTTCCCGAAGCATTTAACAATAAACTACGCATTCGCCCTCTTAAAAAAGGCATAA
TGAATGATCTGCTGGAATATGCAGAAGAAGCCGCTGAGGCGGGAATTTCCAAGAGCAAGTTACGCGAAGCGGTGATTCTT
TTCACCCGCCGAATCGACTACTTAGCTTGCCTTAAAGCCCAAGAAACCCGTATTGATCTACATGGCAACGCTATAGATAA
GGTGTCCAGTGAAGAAGCAGAACGTGCGGCGATAAAAATCAAAAGGCGTGTGGAGAAAAGTGCCAGAAATGCACGAAAAA
CAAATGCAAAAGCCCCAATGGAACCCTATTATTATAATAATTCCACAGACCATCACGACAGTTACAGATCTTCTGCTGAA
GAACATGAATTTCCTGTCTATCCATCCCGTTCTTCCTACAACAACGCAGGACAAAACAGCAAAAACCCATCTGTTGTAAT
TAAACATAAAGCCAGCAAGTCATATGATCCTGAAGCCGTAGCAAGGCTTAAGGAAAAGTTGGGTTTATCAAAACGGGAAT
CCACCACCAAGTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0WGI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

62.613

100

0.641

Multiple sequence alignment