Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E4T54_RS08505 Genome accession   NZ_CP038271
Coordinates   1896347..1897702 (+) Length   451 a.a.
NCBI ID   WP_028386817.1    Uniprot ID   -
Organism   Legionella geestiana strain 1308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1891347..1902702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T54_RS08480 (E4T54_08480) - 1892182..1893288 (-) 1107 WP_028386814.1 competence/damage-inducible protein A -
  E4T54_RS08485 (E4T54_08485) - 1893285..1894067 (-) 783 WP_035902886.1 mechanosensitive ion channel family protein -
  E4T54_RS08490 (E4T54_08490) - 1894046..1894981 (-) 936 WP_065230368.1 polyprenyl synthetase family protein -
  E4T54_RS08495 (E4T54_08495) - 1894974..1895192 (-) 219 WP_028386815.1 exodeoxyribonuclease VII small subunit -
  E4T54_RS08500 (E4T54_08500) - 1895222..1896268 (-) 1047 WP_028386816.1 FAD/NAD(P)-binding protein -
  E4T54_RS08505 (E4T54_08505) radA 1896347..1897702 (+) 1356 WP_028386817.1 DNA repair protein RadA Machinery gene
  E4T54_RS08510 (E4T54_08510) - 1897746..1900202 (-) 2457 WP_115152854.1 hypothetical protein -
  E4T54_RS08515 (E4T54_08515) uppS 1900472..1901206 (+) 735 WP_028386289.1 polyprenyl diphosphate synthase -
  E4T54_RS08520 (E4T54_08520) - 1901199..1902005 (+) 807 WP_028386288.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48500.65 Da        Isoelectric Point: 7.4672

>NTDB_id=353046 E4T54_RS08505 WP_028386817.1 1896347..1897702(+) (radA) [Legionella geestiana strain 1308]
MKTKTRFVCSACAAVFTQWAGQCTQCGAWNAVSEEARMPARPDSRRGNYANERSVIVALEDVSLEARERTDCGLSELNRV
LGGGLVDGAVVLIGGDPGIGKSTLLLQTLAALSAHQPVLYVTGEESLQQVALRARRLQLPLSGLSLLAETHIESILEQAV
RARPRTLVIDSVQTIYTDTLTSAPGSVSQVREAAAQLVRFAKMTGTSVFIVGHVTKDGSLAGPRVLEHMVDCVLYFEGQG
DSRFRVIRAIKNRFGAVNELGVFAMTDRGLREVANPSAIFLSRQPDPAPGSAVMVTWEGSRPMLVEVQALVDEAHGGQPR
RVVAGLEQNRLAILLAVLHRHAGIATFDQDVFVSVVGGVRVGETAIDLALLAAVVSSLRNHVFCRETIVFGEVGLAGEIR
PVQSGQERLREAAKHGFRRAIVPKANAPRQAGDMEVVAVGHLQEALEHFFA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=353046 E4T54_RS08505 WP_028386817.1 1896347..1897702(+) (radA) [Legionella geestiana strain 1308]
ATGAAAACTAAAACGCGTTTTGTATGCAGCGCATGTGCTGCAGTCTTCACACAGTGGGCAGGGCAGTGCACCCAGTGCGG
GGCATGGAATGCGGTTTCTGAAGAGGCGCGCATGCCAGCGCGTCCTGACAGTCGCCGTGGAAATTATGCCAATGAACGCT
CCGTGATTGTGGCGCTTGAGGATGTGAGCCTTGAGGCACGTGAGCGCACGGACTGTGGGCTTTCGGAATTAAACCGCGTG
CTTGGCGGGGGGCTTGTGGATGGTGCGGTGGTTCTGATTGGCGGGGACCCCGGCATTGGCAAATCAACGCTGCTGCTGCA
GACGCTTGCGGCATTATCTGCTCATCAGCCGGTACTTTATGTAACCGGTGAGGAATCCCTGCAACAGGTGGCCCTGCGCG
CACGCCGTCTGCAGCTGCCGCTTTCAGGGCTTTCGCTGCTCGCAGAGACGCACATTGAGTCCATCCTTGAACAGGCGGTA
CGTGCCAGGCCGCGAACGCTCGTGATTGATTCCGTGCAGACCATCTACACCGATACGCTGACATCAGCGCCCGGAAGCGT
GAGCCAGGTGCGCGAAGCCGCAGCCCAGCTTGTGCGTTTTGCCAAAATGACAGGAACCTCCGTGTTTATCGTCGGTCATG
TCACCAAGGATGGCAGCCTCGCAGGTCCGCGCGTACTGGAGCACATGGTCGACTGCGTGCTCTATTTCGAAGGCCAGGGA
GACAGCCGTTTTCGTGTGATTCGCGCCATCAAAAACCGCTTTGGAGCCGTCAACGAGCTTGGGGTGTTTGCGATGACCGA
CCGCGGGCTGCGTGAAGTGGCAAATCCCTCGGCAATTTTTCTTTCGCGACAACCCGACCCGGCTCCCGGCAGCGCCGTGA
TGGTCACCTGGGAAGGTTCACGCCCGATGCTTGTTGAGGTGCAGGCACTGGTTGATGAAGCGCACGGCGGGCAGCCACGG
CGGGTTGTGGCGGGTCTTGAGCAGAACCGCCTTGCCATTCTGCTGGCCGTTTTGCACCGCCATGCGGGCATTGCCACGTT
TGACCAGGATGTCTTCGTGAGCGTGGTGGGAGGGGTGCGTGTCGGTGAGACGGCGATTGATCTTGCACTTCTGGCTGCGG
TGGTTTCAAGCCTTCGCAATCACGTGTTCTGCCGCGAAACCATTGTCTTTGGCGAAGTGGGACTGGCCGGTGAAATCCGC
CCGGTGCAAAGCGGCCAGGAGCGGCTGCGCGAAGCGGCAAAGCACGGGTTTCGCCGCGCGATTGTGCCAAAGGCGAATGC
CCCGCGCCAGGCCGGTGATATGGAAGTGGTCGCCGTTGGACATTTGCAGGAAGCCCTCGAGCATTTTTTTGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-426)

AAA domain (AAA_25)

(73-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.797

100

0.481
  radA Streptococcus mitis SK321

46.239

100

0.463
  radA Streptococcus mitis NCTC 12261

45.714

100

0.461
  radA Streptococcus pneumoniae Rx1

45.714

100

0.461
  radA Streptococcus pneumoniae D39

45.714

100

0.461
  radA Streptococcus pneumoniae R6

45.714

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.714

100

0.461

Multiple sequence alignment