Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPELS_RS04660 | Genome accession | NC_017063 |
| Coordinates | 985106..986116 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664466.1 | Uniprot ID | - |
| Organism | Helicobacter pylori ELS37 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 980106..991116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPELS_RS04635 (HPELS_04785) | - | 980289..981611 (-) | 1323 | WP_000522724.1 | M23 family metallopeptidase | - |
| HPELS_RS04640 (HPELS_04790) | - | 981621..982565 (-) | 945 | WP_000911260.1 | outer membrane beta-barrel protein | - |
| HPELS_RS04645 (HPELS_04795) | - | 982574..983431 (-) | 858 | WP_014419590.1 | outer membrane beta-barrel protein | - |
| HPELS_RS04650 (HPELS_04800) | - | 983421..984143 (-) | 723 | WP_000523331.1 | hypothetical protein | - |
| HPELS_RS04655 (HPELS_04805) | panB | 984293..985105 (+) | 813 | WP_000062685.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPELS_RS04660 (HPELS_04810) | ruvB | 985106..986116 (+) | 1011 | WP_000664466.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPELS_RS04665 (HPELS_04815) | tatB | 986184..986666 (+) | 483 | WP_000467555.1 | Sec-independent protein translocase protein TatB | - |
| HPELS_RS04670 (HPELS_04820) | tatC | 986659..987408 (+) | 750 | WP_000461203.1 | twin-arginine translocase subunit TatC | - |
| HPELS_RS04675 (HPELS_04825) | queA | 987409..988446 (+) | 1038 | WP_001206512.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPELS_RS04680 (HPELS_04830) | rsmG | 988443..988979 (+) | 537 | WP_001068844.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPELS_RS04685 (HPELS_04835) | - | 988973..989203 (+) | 231 | WP_000944425.1 | PP0621 family protein | - |
| HPELS_RS04690 (HPELS_04840) | - | 989206..989613 (+) | 408 | WP_000906062.1 | hypothetical protein | - |
| HPELS_RS04700 (HPELS_04845) | - | 989745..990347 (-) | 603 | WP_000291625.1 | outer membrane protein | - |
| HPELS_RS04705 (HPELS_04850) | - | 990643..991017 (+) | 375 | WP_000772148.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37321.30 Da Isoelectric Point: 6.0715
>NTDB_id=35299 HPELS_RS04660 WP_000664466.1 985106..986116(+) (ruvB) [Helicobacter pylori ELS37]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELAIIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELAIIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=35299 HPELS_RS04660 WP_000664466.1 985106..986116(+) (ruvB) [Helicobacter pylori ELS37]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTATCATCATTAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCCAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCACTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAACTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCGGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACGGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCTACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTATCATCATTAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCCAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCACTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAACTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCGGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACGGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCTACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |