Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RB2501_RS04540 Genome accession   NC_013222
Coordinates   1023657..1025015 (-) Length   452 a.a.
NCBI ID   WP_015753574.1    Uniprot ID   A4CIR0
Organism   Robiginitalea biformata HTCC2501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018657..1030015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB2501_RS04520 (RB2501_07930) - 1018848..1020923 (-) 2076 WP_015753570.1 TonB-dependent receptor domain-containing protein -
  RB2501_RS04525 (RB2501_07935) - 1021073..1021594 (-) 522 WP_041327494.1 hypothetical protein -
  RB2501_RS04530 (RB2501_07940) - 1021749..1022519 (+) 771 WP_041327495.1 exodeoxyribonuclease III -
  RB2501_RS04535 (RB2501_07945) - 1022534..1023574 (+) 1041 WP_015753573.1 NADP(H)-dependent aldo-keto reductase -
  RB2501_RS04540 (RB2501_07950) radA 1023657..1025015 (-) 1359 WP_015753574.1 DNA repair protein RadA Machinery gene
  RB2501_RS04545 (RB2501_07955) - 1025083..1026228 (-) 1146 WP_015753575.1 alpha/beta hydrolase -
  RB2501_RS04550 (RB2501_07960) - 1026254..1027219 (-) 966 WP_015753576.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  RB2501_RS04555 (RB2501_07965) panD 1027222..1027572 (-) 351 WP_015753577.1 aspartate 1-decarboxylase -
  RB2501_RS04560 (RB2501_07970) panC 1027586..1028434 (-) 849 WP_015753578.1 pantoate--beta-alanine ligase -
  RB2501_RS04565 (RB2501_07975) - 1028537..1029346 (+) 810 WP_015753579.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48915.39 Da        Isoelectric Point: 7.3088

>NTDB_id=35299 RB2501_RS04540 WP_015753574.1 1023657..1025015(-) (radA) [Robiginitalea biformata HTCC2501]
MAKTKTAYFCQNCGAQFPKWSGQCNSCKEWNTLAEELLQKPDTRDWKSSEAPARSSKPVRLGEIPTDREMRLSSGDPELD
RVLGGGLVPGSLTLIGGEPGIGKSTLMLQMALKVALRTLYVSGEESQRQIAMRAQRIRPDADSCYILTETNTNRIFKQIT
ALEPELVIVDSIQTLHSDYLEAGAGSVSQIRECTAELIKFAKESHTPVILIGHITKEGSIAGPKILEHMVDTVLQFEGDR
NHLFRIVRALKNRFGNTSELGIYEMKGDGLHGVVNPSEILISRSGESLSGTAVAATVEGLRPLLIEIQALVSTAVYGTPQ
RSATGFPAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGIQVDDPAIDLAVLAAILSSNADIPVPKGVCFAGEIGLAGEIR
PVPRIDQRVGEASKLGFETIYVSANAKISLKTPGIDVRKVAKVEELVRALFD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=35299 RB2501_RS04540 WP_015753574.1 1023657..1025015(-) (radA) [Robiginitalea biformata HTCC2501]
ATGGCCAAGACCAAAACAGCCTATTTCTGCCAGAATTGCGGCGCCCAGTTCCCCAAGTGGTCCGGGCAGTGCAATTCGTG
CAAAGAGTGGAATACCCTCGCGGAAGAATTGCTCCAGAAGCCCGACACCCGGGACTGGAAATCGTCCGAGGCCCCGGCGC
GTAGTTCAAAACCCGTACGCCTTGGCGAAATCCCCACCGACCGGGAAATGCGGCTTTCCAGCGGCGACCCGGAACTCGAC
CGGGTACTCGGGGGCGGCCTGGTGCCCGGCTCCCTCACGCTGATTGGGGGAGAACCCGGGATCGGCAAGAGCACGCTGAT
GCTGCAAATGGCCCTGAAGGTCGCCCTGCGCACCCTGTATGTCTCCGGGGAGGAAAGCCAGCGGCAAATAGCCATGCGCG
CACAACGCATCCGGCCCGATGCGGATTCCTGCTATATCCTCACCGAGACGAATACCAACCGGATCTTCAAACAAATTACC
GCCCTGGAGCCCGAGCTGGTGATTGTCGATTCCATACAGACCCTGCATTCCGATTACCTGGAGGCCGGAGCGGGCAGTGT
CTCCCAGATCCGGGAGTGCACAGCCGAACTGATCAAATTTGCCAAGGAATCCCATACGCCTGTGATCCTGATTGGCCACA
TCACCAAAGAAGGCAGCATCGCGGGGCCGAAGATCCTCGAGCACATGGTGGACACCGTATTGCAATTCGAAGGGGACCGA
AACCACCTGTTCCGCATTGTGCGCGCCCTGAAAAACCGGTTTGGAAACACTTCCGAACTGGGAATCTATGAAATGAAGGG
CGACGGACTGCACGGGGTGGTGAACCCGTCGGAAATCCTGATTTCCCGATCCGGCGAATCCCTGAGCGGCACGGCCGTGG
CGGCTACCGTCGAAGGGCTCCGGCCGCTGCTGATCGAAATCCAGGCTCTGGTCAGTACAGCGGTCTACGGCACACCCCAG
CGTTCGGCCACCGGGTTCCCGGCCAAGAGGCTGAACATGCTCCTGGCGGTCCTGGAAAAACGAGCCGGCTTCAAGCTGGC
AGCCAAGGATGTCTTTCTGAATATCACCGGGGGGATACAGGTAGACGACCCGGCCATCGACCTGGCCGTGCTGGCGGCTA
TCCTATCGAGCAACGCAGACATCCCGGTGCCCAAAGGGGTGTGTTTTGCGGGGGAAATCGGCCTGGCCGGCGAGATCCGG
CCGGTGCCCCGGATTGACCAGCGCGTGGGGGAGGCTTCCAAGCTCGGTTTCGAGACCATCTATGTGTCCGCCAACGCCAA
GATCTCCCTGAAAACACCGGGGATCGACGTGCGGAAAGTGGCCAAGGTAGAAGAACTCGTCCGGGCGCTTTTCGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4CIR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

100

0.491
  radA Streptococcus pneumoniae Rx1

45.595

100

0.458
  radA Streptococcus pneumoniae D39

45.595

100

0.458
  radA Streptococcus pneumoniae R6

45.595

100

0.458
  radA Streptococcus pneumoniae TIGR4

45.595

100

0.458
  radA Streptococcus mitis NCTC 12261

45.595

100

0.458
  radA Streptococcus mitis SK321

45.595

100

0.458

Multiple sequence alignment