Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SaO408_RS01985 Genome accession   NZ_CP038270
Coordinates   416915..417418 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 416915..435198 416915..417418 within 0


Gene organization within MGE regions


Location: 416915..435198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS01985 (SaO408_0375) ssbA 416915..417418 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SaO408_RS01990 (SaO408_0376) rpsR 417470..417712 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  SaO408_RS01995 (SaO408_0377) - 417953..419266 (-) 1314 WP_120672824.1 site-specific integrase -
  SaO408_RS02000 (SaO408_0378) - 419722..420417 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  SaO408_RS02005 (SaO408_0379) - 420561..420773 (+) 213 WP_000794656.1 helix-turn-helix transcriptional regulator -
  SaO408_RS02010 (SaO408_0380) - 420774..421046 (+) 273 WP_000091734.1 helix-turn-helix domain-containing protein -
  SaO408_RS02015 (SaO408_0381) - 421058..421204 (+) 147 WP_031824147.1 hypothetical protein -
  SaO408_RS02020 (SaO408_0382) - 421197..421406 (+) 210 WP_001058493.1 hypothetical protein -
  SaO408_RS02025 (SaO408_0383) - 421409..421735 (+) 327 WP_001103963.1 DUF1474 family protein -
  SaO408_RS02030 (SaO408_0384) - 421800..422669 (+) 870 WP_001002688.1 primase alpha helix C-terminal domain-containing protein -
  SaO408_RS02035 (SaO408_0385) - 422683..424392 (+) 1710 WP_000447458.1 DUF927 domain-containing protein -
  SaO408_RS02040 (SaO408_0386) - 424704..425084 (+) 381 WP_000356937.1 hypothetical protein -
  SaO408_RS02045 (SaO408_0387) - 425081..425722 (+) 642 WP_001019786.1 hypothetical protein -
  SaO408_RS02050 (SaO408_0388) - 426069..426410 (+) 342 WP_001190600.1 hypothetical protein -
  SaO408_RS02055 (SaO408_0389) - 426422..427000 (+) 579 WP_000846276.1 hypothetical protein -
  SaO408_RS02060 (SaO408_0390) - 427018..427236 (+) 219 WP_000853271.1 capsid morphogenesis B protein -
  SaO408_RS02065 (SaO408_0391) - 427287..427814 (+) 528 WP_000765272.1 spore coat protein -
  SaO408_RS02070 - 427946..428158 (+) 213 WP_078064908.1 pathogenicity island family protein -
  SaO408_RS02075 (SaO408_0393) - 428155..428724 (+) 570 WP_043039651.1 terminase small subunit -
  SaO408_RS02080 (SaO408_0394) - 428831..429181 (+) 351 WP_000768417.1 complement inhibitor SCIN family protein -
  SaO408_RS02085 (SaO408_0395) vwb 429440..430939 (+) 1500 WP_000731021.1 von Willebrand factor binding protein Vwb -
  SaO408_RS14355 (SaO408_0396) - 431251..431532 (+) 282 WP_025174648.1 hypothetical protein -
  SaO408_RS02095 (SaO408_0397) - 431651..432163 (+) 513 WP_000813314.1 hypothetical protein -
  SaO408_RS14360 - 432179..432358 (+) 180 WP_000797954.1 hypothetical protein -
  SaO408_RS02110 (SaO408_0398) - 432826..433551 (+) 726 WP_000166620.1 CPBP family intramembrane glutamic endopeptidase -
  SaO408_RS02115 (SaO408_0399) - 434191..435198 (-) 1008 WP_001080631.1 Abi family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=352989 SaO408_RS01985 WP_000934799.1 416915..417418(+) (ssbA) [Staphylococcus aureus strain O408 isolate B115]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=352989 SaO408_RS01985 WP_000934799.1 416915..417418(+) (ssbA) [Staphylococcus aureus strain O408 isolate B115]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment