Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GN312_RS04005 Genome accession   NZ_CP046527
Coordinates   683619..684134 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain RM19259     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 678619..689134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN312_RS03980 (GN312_03980) ygaZ 679018..679755 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  GN312_RS03985 (GN312_03985) ygaH 679745..680080 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  GN312_RS03990 (GN312_03990) emrR 680171..680701 (+) 531 WP_000378437.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GN312_RS03995 (GN312_03995) emrA 680828..682000 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GN312_RS04000 (GN312_04000) emrB 682017..683555 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GN312_RS04005 (GN312_04005) luxS 683619..684134 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  GN312_RS04010 (GN312_04010) gshA 684284..685840 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  GN312_RS04015 (GN312_04015) yqaA 685913..686341 (-) 429 WP_001287450.1 YqaA family protein -
  GN312_RS04020 (GN312_04020) yqaB 686338..686904 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GN312_RS04050 (GN312_04050) csrA 688132..688317 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=352986 GN312_RS04005 WP_001130215.1 683619..684134(-) (luxS) [Escherichia coli strain RM19259]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=352986 GN312_RS04005 WP_001130215.1 683619..684134(-) (luxS) [Escherichia coli strain RM19259]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment