Detailed information NTG0035295

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPELS_RS04030
• Genome accession: NC_017063
• Coordinates: 845558..846766 (+)
• Length: 402 a.a.
• NCBI ID: WP_000814188.1
• Uniprot ID: -
• Organism: Helicobacter pylori ELS37
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 840558..851766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPELS_RS04005 (HPELS_04125)	-	840687..840923 (+)	237	WP_001168532.1	hypothetical protein	-
HPELS_RS04010	-	840923..843500 (+)	2578	Protein_771	VirB4 family type IV secretion/conjugal transfer ATPase	-
HPELS_RS08725 (HPELS_04140)	-	843497..843637 (+)	141	WP_000789926.1	hypothetical protein	-
HPELS_RS04020 (HPELS_04145)	-	843630..843995 (+)	366	Protein_773	hypothetical protein	-
HPELS_RS04025 (HPELS_04150)	-	844030..845561 (+)	1532	Protein_774	TrbG/VirB9 family P-type conjugative transfer protein	-
HPELS_RS04030 (HPELS_04155)	comB10	845558..846766 (+)	1209	WP_000814188.1	DNA type IV secretion system protein ComB10	Machinery gene
HPELS_RS04035	-	846750..848989 (+)	2240	Protein_776	collagen-like protein	-
HPELS_RS04040 (HPELS_04170)	-	849002..849973 (+)	972	WP_000363082.1	membrane protein	-
HPELS_RS04045 (HPELS_04175)	-	849991..850266 (+)	276	WP_000883382.1	hypothetical protein	-
HPELS_RS04050 (HPELS_04180)	-	850271..851215 (+)	945	WP_025444910.1	ATPase, T2SS/T4P/T4SS family	-
HPELS_RS04055 (HPELS_04185)	-	851212..851730 (+)	519	WP_000760568.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44988.57 Da
• Isoelectric Point: 10.0507

>NTDB_id=35295 HPELS_RS04030 WP_000814188.1 845558..846766(+) (comB10) [Helicobacter pylori ELS37]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=35295 HPELS_RS04030 WP_000814188.1 845558..846766(+) (comB10) [Helicobacter pylori ELS37]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAAGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGGAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.538	98.01	0.515