Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPELS_RS04000 | Genome accession | NC_017063 |
| Coordinates | 840412..840675 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | Q8RMZ0 |
| Organism | Helicobacter pylori ELS37 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 835412..845675
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPELS_RS03965 (HPELS_04085) | - | 835992..836630 (-) | 639 | WP_000119949.1 | hypothetical protein | - |
| HPELS_RS03970 (HPELS_04090) | csd3 | 836630..837841 (-) | 1212 | WP_000231074.1 | peptidoglycan DD-metalloendopeptidase Csd3 | - |
| HPELS_RS03975 (HPELS_04095) | - | 838051..838332 (-) | 282 | Protein_765 | R.Pab1 family restriction endonuclease | - |
| HPELS_RS03980 (HPELS_04100) | - | 838627..839415 (+) | 789 | WP_001140569.1 | hypothetical protein | - |
| HPELS_RS03990 (HPELS_04110) | - | 839640..840128 (+) | 489 | WP_000571131.1 | hypothetical protein | - |
| HPELS_RS03995 (HPELS_04115) | comB2 | 840116..840400 (+) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| HPELS_RS04000 (HPELS_04120) | comB3 | 840412..840675 (+) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| HPELS_RS04005 (HPELS_04125) | - | 840687..840923 (+) | 237 | WP_001168532.1 | hypothetical protein | - |
| HPELS_RS04010 | - | 840923..843500 (+) | 2578 | Protein_771 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HPELS_RS08725 (HPELS_04140) | - | 843497..843637 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| HPELS_RS04020 (HPELS_04145) | - | 843630..843995 (+) | 366 | Protein_773 | hypothetical protein | - |
| HPELS_RS04025 (HPELS_04150) | - | 844030..845561 (+) | 1532 | Protein_774 | TrbG/VirB9 family P-type conjugative transfer protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=35294 HPELS_RS04000 WP_001177718.1 840412..840675(+) (comB3) [Helicobacter pylori ELS37]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=35294 HPELS_RS04000 WP_001177718.1 840412..840675(+) (comB3) [Helicobacter pylori ELS37]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |