Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPELS_RS03995 Genome accession   NC_017063
Coordinates   840116..840400 (+) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   Q8RMZ1
Organism   Helicobacter pylori ELS37     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835116..845400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS03965 (HPELS_04085) - 835992..836630 (-) 639 WP_000119949.1 hypothetical protein -
  HPELS_RS03970 (HPELS_04090) csd3 836630..837841 (-) 1212 WP_000231074.1 peptidoglycan DD-metalloendopeptidase Csd3 -
  HPELS_RS03975 (HPELS_04095) - 838051..838332 (-) 282 Protein_765 R.Pab1 family restriction endonuclease -
  HPELS_RS03980 (HPELS_04100) - 838627..839415 (+) 789 WP_001140569.1 hypothetical protein -
  HPELS_RS03990 (HPELS_04110) - 839640..840128 (+) 489 WP_000571131.1 hypothetical protein -
  HPELS_RS03995 (HPELS_04115) comB2 840116..840400 (+) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  HPELS_RS04000 (HPELS_04120) comB3 840412..840675 (+) 264 WP_001177718.1 hypothetical protein Machinery gene
  HPELS_RS04005 (HPELS_04125) - 840687..840923 (+) 237 WP_001168532.1 hypothetical protein -
  HPELS_RS04010 - 840923..843500 (+) 2578 Protein_771 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPELS_RS08725 (HPELS_04140) - 843497..843637 (+) 141 WP_000789926.1 hypothetical protein -
  HPELS_RS04020 (HPELS_04145) - 843630..843995 (+) 366 Protein_773 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=35293 HPELS_RS03995 WP_000413637.1 840116..840400(+) (comB2) [Helicobacter pylori ELS37]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=35293 HPELS_RS03995 WP_000413637.1 840116..840400(+) (comB2) [Helicobacter pylori ELS37]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8RMZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553