Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GOM46_RS04305 Genome accession   NZ_CP046525
Coordinates   859205..860275 (+) Length   356 a.a.
NCBI ID   WP_006150680.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854205..865275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS04285 (GOM46_04270) - 855593..856336 (+) 744 WP_006150728.1 CPBP family intramembrane glutamic endopeptidase -
  GOM46_RS04290 (GOM46_04275) - 856728..857038 (-) 311 Protein_830 transposase -
  GOM46_RS04295 (GOM46_04285) - 857553..858566 (-) 1014 WP_235083277.1 hypothetical protein -
  GOM46_RS04300 (GOM46_04290) - 858719..858958 (+) 240 WP_025170022.1 zinc-ribbon domain-containing protein -
  GOM46_RS04305 (GOM46_04295) xerS 859205..860275 (+) 1071 WP_006150680.1 tyrosine recombinase XerS Machinery gene
  GOM46_RS04310 (GOM46_04300) - 860352..860993 (-) 642 WP_006150666.1 hypothetical protein -
  GOM46_RS04315 (GOM46_04305) - 861105..862094 (-) 990 WP_006150700.1 lipoate--protein ligase -
  GOM46_RS04320 (GOM46_04310) lpdA 862287..863993 (-) 1707 WP_006150673.1 dihydrolipoyl dehydrogenase -
  GOM46_RS04325 (GOM46_04315) - 864032..865075 (-) 1044 WP_006150720.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41198.33 Da        Isoelectric Point: 9.5986

>NTDB_id=352935 GOM46_RS04305 WP_006150680.1 859205..860275(+) (xerS) [Streptococcus infantis strain SO]
MKREILLERIDKLKQVMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFTWVLESGISNADTMANIPLNVLENMTKKDME
SFILYLRERPLLNANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLGDETEGFLNYIDEEYPKTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLEQYLAIRDKRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=352935 GOM46_RS04305 WP_006150680.1 859205..860275(+) (xerS) [Streptococcus infantis strain SO]
ATGAAACGTGAAATCTTATTAGAACGGATTGATAAACTCAAACAAGTCATGCCCTGGTACGTCCTGGAATACTATCAATC
AAAACTAGCTGTTCCATACAGTTTTACGACCTTGTACGAATACTTAAAGGAATACGATCGATTTTTTACCTGGGTCTTGG
AATCTGGTATATCGAATGCTGACACCATGGCTAATATTCCTTTGAATGTTCTTGAGAACATGACCAAGAAAGACATGGAA
TCTTTTATTCTTTACTTACGTGAACGTCCTTTACTCAATGCTAATACGACAAAGAATGGTGTCTCCCAAACAACTATTAA
TCGAACATTATCAGCATTGTCTAGCCTTTATAAGTATTTGACTGAGGAAGTTGAAAATGAGCAAGGAGAACCTTATTTCT
ACCGCAACGTCATGAAGAAGGTAGCTACCAAGAAAAAGAAAGAAACCTTGGCGGCCCGAGCTGAAAATATCAAGCAAAAG
CTCTTTTTAGGCGATGAAACAGAGGGATTTTTGAATTATATCGATGAGGAATATCCTAAAACTCTCTCTAATCGCGCTTT
ATCCTCTTTTAATAAGAATAAAGAGCGAGATTTAGCCATTATCGCACTCCTTCTCGCCTCTGGCGTCCGTCTCTCTGAAG
CCGTTAACCTAGACCTTCGTGACCTCAATCTTAAGATGATGGTCATTGACGTCACTCGAAAAGGTGGAAAACGTGACTCG
GTCAATGTTGCTGCCTTTGCTAAGCCTTATCTAGAGCAATATCTTGCTATTCGAGACAAACGTTACAAGACAGAAAAGAC
TGATACAGCCCTATTTCTGACCTTGTATCGAGGTGTTCCAAACCGAATTGATGCTTCTAGTGTTGAAAAGATGGTGGCTA
AGTATTCGGAAGACTTCAAAGTCCGCGTGACACCCCATAAACTACGTCATACATTAGCAACTCGTCTCTATGATGCCACC
AAGTCACAAGTTTTGGTCAGCCACCAGCTGGGACATGCCAGCACACAAGTTACCGACTTGTATACCCATATTGTTAATGA
TGAACAGAAAAATGCCTTGGATAGTTTGTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(189-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(70-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

94.663

100

0.947