Detailed information NTG0352929

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GOM46_RS03690
• Genome accession: NZ_CP046525
• Coordinates: 747689..748798 (+)
• Length: 369 a.a.
• NCBI ID: WP_004252673.1
• Uniprot ID: A0ABU5FPT6
• Organism: Streptococcus infantis strain SO
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 742689..753798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM46_RS03670 (GOM46_03650)	trpX	743001..743999 (+)	999	WP_235084082.1	tryptophan ABC transporter substrate-binding protein	-
GOM46_RS03675 (GOM46_03655)	-	744061..744927 (+)	867	WP_016465932.1	ABC transporter permease	-
GOM46_RS03680 (GOM46_03660)	-	744924..745682 (+)	759	WP_235084083.1	ABC transporter ATP-binding protein	-
GOM46_RS03685 (GOM46_03665)	dnaG	745926..747686 (+)	1761	WP_235084084.1	DNA primase	-
GOM46_RS03690 (GOM46_03670)	rpoS	747689..748798 (+)	1110	WP_004252673.1	RNA polymerase sigma factor RpoD	Regulator
GOM46_RS03695 (GOM46_03675)	-	748816..749145 (+)	330	WP_000331926.1	metal-sulfur cluster assembly factor	-
GOM46_RS03700 (GOM46_03680)	-	749256..750299 (+)	1044	WP_235084085.1	glycosyltransferase family 4 protein	-
GOM46_RS03705 (GOM46_03685)	-	750308..751624 (+)	1317	WP_235084086.1	glycosyltransferase family 4 protein	-
GOM46_RS03710 (GOM46_03690)	-	751650..751841 (+)	192	WP_235084087.1	PspC domain-containing protein	-
GOM46_RS03715 (GOM46_03695)	-	751987..752436 (+)	450	WP_235084088.1	hypothetical protein	-
GOM46_RS03720 (GOM46_03700)	-	752457..752906 (+)	450	WP_006150604.1	hypothetical protein	-
GOM46_RS03725 (GOM46_03705)	-	753080..753214 (+)	135	WP_000863850.1	DUF4044 domain-containing protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42097.81 Da
• Isoelectric Point: 4.5020

>NTDB_id=352929 GOM46_RS03690 WP_004252673.1 747689..748798(+) (rpoS) [Streptococcus infantis strain SO]
MAKKQKEVTTFDVQVAEFIRNHKKTGTATDDEINNVLVIPFALDVEGIENLLQRIQDAGIAITDNEGNPSERVLSTEEEP
ELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAGDVEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=352929 GOM46_RS03690 WP_004252673.1 747689..748798(+) (rpoS) [Streptococcus infantis strain SO]
ATGGCAAAAAAACAAAAAGAAGTAACAACTTTTGATGTCCAAGTCGCTGAGTTTATTCGTAACCATAAGAAAACTGGTAC
TGCGACAGATGATGAAATTAACAATGTCCTTGTAATTCCTTTTGCTCTTGATGTTGAAGGGATTGAAAATCTTTTGCAAC
GTATTCAAGATGCAGGTATTGCAATCACGGATAACGAAGGAAATCCAAGTGAACGTGTTCTAAGTACAGAAGAAGAACCG
GAACTAAGTGATGAGGACTTAATTGGTTCTACATCTGCCAAGGTCAATGACCCTGTTCGTATGTACTTGAAAGAAATTGG
AGTTGTACCTCTTCTTACAAACGAAGAGGAAAAAGAGTTGGCCCTTGCTGTTGAGGCTGGCGATGTTGAAGCTAAGCAAC
GTCTAGCAGAAGCTAACCTTCGTTTGGTTGTGTCTATCGCGAAACGCTATGTTGGACGTGGAATGCAATTCCTTGACTTA
ATCCAAGAGGGTAACATGGGGCTTATGAAAGCCGTTGATAAATTTGACTACTCTAAAGGGTTCAAATTCTCAACTTATGC
AACTTGGTGGATCCGTCAGGCCATTACTCGTGCCATTGCTGACCAAGCTCGTACCATCCGTATCCCAGTTCACATGGTGG
AAACTATCAACAAGCTTGTTCGTGAACAACGTAATCTTCTTCAAGAGTTGGGACAAGACCCTACTCCTGAACAAATTGCA
GAACGTATGGATATGACACCTGATAAGGTTCGTGAAATCCTTAAGATTGCTCAGGAACCAGTTTCTCTTGAAACACCTAT
TGGTGAAGAAGATGACAGCCATCTTGGTGACTTTATCGAAGATGAAGTGATTGAAAATCCAGTTGATTACACAACTCGCA
TAGTTTTGCGTGAGCAGTTGGATGAAGTGTTAGACACATTGACTGACCGTGAAGAGAATGTTCTTCGTCTTCGTTTTGGT
CTCGATGATGGGAAAATGCGTACGTTAGAAGATGTGGGTAAAGTCTTTAACGTTACTCGTGAGCGTATTCGTCAGATTGA
GGCAAAAGCTTTAAGAAAACTTCGACAGCCAAGTCGTAGCAAACCGCTTCGTGACTTTATCGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-85)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.918	79.675	0.366