Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GOM46_RS02160 Genome accession   NZ_CP046525
Coordinates   421234..423600 (-) Length   788 a.a.
NCBI ID   WP_235083855.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 416234..428600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02135 (GOM46_02120) fni 416357..417358 (+) 1002 WP_235083850.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  GOM46_RS02140 (GOM46_02125) liaF 417453..418151 (+) 699 WP_235083851.1 cell wall-active antibiotics response protein LiaF -
  GOM46_RS02145 (GOM46_02130) - 418148..419146 (+) 999 WP_235083852.1 sensor histidine kinase -
  GOM46_RS02150 (GOM46_02135) vraR 419158..419790 (+) 633 WP_235083853.1 response regulator transcription factor Regulator
  GOM46_RS02155 (GOM46_02140) tig 419903..421186 (+) 1284 WP_235083854.1 trigger factor -
  GOM46_RS02160 (GOM46_02145) recD/recD2/recDB 421234..423600 (-) 2367 WP_235083855.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GOM46_RS02165 (GOM46_02150) lepB 423691..424305 (-) 615 WP_025169989.1 signal peptidase I -
  GOM46_RS02170 (GOM46_02155) rnhC 424309..425190 (-) 882 WP_235083856.1 ribonuclease HIII -
  GOM46_RS02175 (GOM46_02160) zapA 425277..425579 (+) 303 WP_006150060.1 cell division protein ZapA -
  GOM46_RS02180 (GOM46_02165) - 425576..426124 (+) 549 WP_006150346.1 CvpA family protein -
  GOM46_RS02185 (GOM46_02170) mutS/mutS2 426234..428570 (+) 2337 WP_235083857.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88577.35 Da        Isoelectric Point: 4.5155

>NTDB_id=352912 GOM46_RS02160 WP_235083855.1 421234..423600(-) (recD/recD2/recDB) [Streptococcus infantis strain SO]
MEVYFTGTIERIIFENVSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEEYTFWGQIVQHSKYGEQLQITRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVELYGENTIDEILEHPEKLETISGLSSKSREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAIQIQDTYKEETIDIVENYPYQLVEDIKGLGFTIADQLAQELGIESHAPERFRAGLVHSLLNACMESGDTYVES
KDLLEKTLTLLESSRPVELEPSQLAQELSNLIEEEKVQQVDTKIFDNSLFFAEEGIHNHLIRILEKEDPNKHEIKTIQEH
IATVEKELGIQYDAIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIGVYALLEGLDLRKKSSLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPCIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASSHIPATIEKILDAAIRNGIPARDIQV
LAPMYRGTAGIDAINQLMQELLNPLQKGQISFEASQFHYRTGDKIIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
IIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAIK
HIGTARKTYLIERFSDLTESSEEATEPILETSNQTDSQQSYILTEDNWSSIPAMIGISQDDLQEFFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=352912 GOM46_RS02160 WP_235083855.1 421234..423600(-) (recD/recD2/recDB) [Streptococcus infantis strain SO]
ATGGAAGTCTATTTTACAGGTACGATTGAACGTATTATTTTTGAAAATGTCAGTAATTTTTATCGTATTCTTCTCCTTGA
TATCGAAGATACCAATGCTGAGGACTTTGATGATTTCGAGATCATTGTTACAGGGACCATGGCTGATGTCATCGAGGGAG
AGGAATACACTTTTTGGGGGCAGATTGTCCAACACTCCAAATACGGAGAGCAACTACAAATTACCCGTTATGAAAGAGCA
AAACCGACTAGCAAGGGCTTAGTTAAGTATTTCTCTAGTAGCCATTTCAAAGGGATTGGGCTCAAAACTGCCCAAAAGAT
TGTGGAACTCTATGGAGAAAATACCATTGATGAAATCCTAGAGCATCCTGAGAAACTCGAAACCATCTCAGGACTATCTT
CTAAAAGTCGTGAAGCCTTCGTTTCCACTCTCCGTCTCAACTACGGAACTGAGATGGTTTTGGCCAAGCTTGCCAATTAC
GGAATTCCCAATAAATTAGCTATTCAAATCCAGGATACCTATAAAGAGGAAACCATCGATATCGTTGAAAATTATCCTTA
TCAGTTGGTAGAAGATATCAAGGGTTTGGGCTTTACCATCGCTGACCAATTAGCACAGGAATTGGGGATTGAGAGTCATG
CACCTGAACGCTTTCGAGCAGGTCTTGTTCATAGCCTTTTAAATGCTTGTATGGAAAGTGGGGATACTTATGTTGAATCA
AAAGATCTATTAGAAAAAACTCTAACCCTACTTGAATCCTCACGACCTGTTGAACTGGAGCCCAGTCAACTTGCACAAGA
ATTATCCAATCTCATTGAAGAAGAAAAAGTTCAGCAGGTTGATACGAAAATCTTTGATAACAGTCTCTTTTTCGCTGAAG
AAGGAATACACAATCACCTCATTCGTATTCTTGAAAAAGAAGACCCCAATAAACACGAAATAAAAACTATCCAGGAGCAT
ATCGCAACTGTTGAGAAGGAATTAGGCATCCAATACGATGCCATTCAAAAGCAGGCTATCTGCGACGCTATCCAAAACAA
GGTCTTTATCCTGACAGGTGGACCTGGTACAGGTAAGACCACTGTTATCAATGGAATTATTGGTGTTTATGCCCTATTAG
AGGGGCTCGACCTTCGGAAAAAAAGTAGTCTACCGATTCTCCTGGCTGCTCCAACCGGTCGTGCAGCACGTCGCATGAAT
GAACTGACAGGCTTGCCTAGTGCAACGATTCACCGCCACTTGGGTATGACTGGAGACGACGATACCAGTCATTTGGAGGA
TTATCTAGATGCTGATTTTATCATCGTGGATGAGTTTTCTATGGTGGATACCTGGCTAGCCAATCAACTCTTCTCCAATA
TCTCCTCTAACAGTAAAATTCTCATTGTCGGAGATAGTGACCAGCTGCCATCGGTTAGCCCTGGTCAAGTCCTGGCTGAC
TTACTCCAAATTCCATGCATTCCTCAAACACGCTTGGAAAGAATCTACCGTCAGAGTGAAGAATCAACCATTGTCACCCT
TGCTAGCCAAATTCGTCAAGGAATTTTGCCTGCAGATTTCACTCAGAAAAAAGCAGATCGTTCCTACTTTGAAATCGCTA
GTAGCCATATCCCTGCGACCATTGAAAAAATCCTTGATGCTGCTATCAGAAATGGTATTCCCGCTCGTGATATCCAAGTT
CTGGCTCCTATGTATCGTGGTACAGCAGGAATTGATGCCATCAATCAACTCATGCAAGAACTGCTCAATCCTCTTCAAAA
GGGGCAGATTAGTTTTGAGGCAAGTCAGTTTCATTATCGCACAGGCGATAAGATCATTCATCTTGTCAACGATGCAGAAG
TCAATGTCTTTAATGGAGACTTAGGCTATATTACAGACCTGATTCCTGGAAAATACACTGAATCCAAGCAAGATGAAATC
ATAATTGATTTTGATGGCAACGAGGTTTCCTATCCTCGAAATGAATGGTACAAGATTCGCCTTGCCTATGCTATGAGTAT
CCATAAGTCTCAGGGTAGTGAGTTCCCAGTTGTGATTTTACCAATTACCAGTGCTAGCAAGCGCATGCTGGAGCGCAATC
TCATCTACACTGCTATCACTCGTGCCAAAAGCAAGCTCATCCTACTTGGTGAACTACAAGCCTTTGACTATGCAATCAAA
CACATTGGAACAGCTCGCAAGACCTATCTGATTGAACGTTTCAGCGATTTAACTGAAAGCTCTGAAGAAGCAACTGAGCC
TATTCTTGAAACCTCTAATCAGACTGATTCTCAGCAATCCTACATTCTAACCGAGGACAACTGGTCTAGTATCCCAGCTA
TGATTGGAATTAGCCAGGATGATCTTCAAGAATTTTTCGGAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.578

94.924

0.395