Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GOM46_RS01545 Genome accession   NZ_CP046525
Coordinates   301105..303324 (+) Length   739 a.a.
NCBI ID   WP_235084136.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296105..308324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01515 (GOM46_01500) - 297135..297728 (-) 594 WP_006150062.1 Asp23/Gls24 family envelope stress response protein -
  GOM46_RS01520 (GOM46_01505) - 297742..297912 (-) 171 WP_006144923.1 DUF2273 domain-containing protein -
  GOM46_RS01525 (GOM46_01510) amaP 297925..298488 (-) 564 WP_006144924.1 alkaline shock response membrane anchor protein AmaP -
  GOM46_RS01530 (GOM46_01515) - 298965..299417 (-) 453 WP_016466819.1 universal stress protein -
  GOM46_RS01535 (GOM46_01520) - 299562..300401 (+) 840 WP_235083751.1 metallophosphoesterase family protein -
  GOM46_RS01540 (GOM46_01525) - 300471..300908 (+) 438 WP_006144928.1 Rrf2 family transcriptional regulator -
  GOM46_RS01545 (GOM46_01530) recJ 301105..303324 (+) 2220 WP_235084136.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GOM46_RS01550 (GOM46_01535) - 303537..304199 (+) 663 WP_235083752.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  GOM46_RS01555 (GOM46_01540) - 304526..306187 (+) 1662 WP_006150309.1 ribonuclease J -
  GOM46_RS01560 (GOM46_01545) - 306256..307035 (+) 780 WP_235083753.1 alpha/beta hydrolase -
  GOM46_RS01565 (GOM46_01550) - 307142..307843 (+) 702 WP_235083754.1 M57 family metalloprotease -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82079.61 Da        Isoelectric Point: 4.3462

>NTDB_id=352899 GOM46_RS01545 WP_235084136.1 301105..303324(+) (recJ) [Streptococcus infantis strain SO]
MIIPTYNWQFSPQVEDADFTKIAKSVGLSSEVACLLFQRGIKDESSLKKFLEPSLEDLHDPYLLHDMDKAVDRIRQAVEQ
GELILVYGDYDADGMTSASIVKESLEQLGAECLVYLPNRFTDGYGPNASVYKYFIEQQGVSLIVTVDNGVAGHEAIDLAQ
SMGVDVIVTDHHSMPEVLPGAYAIVHPEHPEADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADIVSLTDENR
IMVQYGLEVLRNTQRIGLQELFEIAGIATSDITEETVGFQLAPRLNALGRLDDPNPAIDLLTGFDDEEVHEIALMIQEKN
EERKEIVQAIYDEAKNMVDPSKSVQVLSKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSIEAVDIFEALDP
HRALFIAFGGHAGAAGMTLEAEQLDALSEILETYVKDKGIDAKGKSKLYLDEELDLESLSLDTVKSFEKLAPFGMDNQKP
VFYIRDFQVENARSMGAGDSHLKLKISKGTANFEVVAFGQGSKATEFAQTKQLELAVTLSVNQWNGQTTLQLMMVDARVD
GVQLFNIRGKNAVLPDGVPVLDFAGELPDISSSPAVVVKNIPEDIRILKDIFQQHDFSAVYFKNDIEKPYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLSAYLKIEQILLVKMIQIFEELGFVTIENGVMRVNKDAAKRDIAESQIYQNLKQTVKD
QEMLALGTVQEIYDFLMGK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=352899 GOM46_RS01545 WP_235084136.1 301105..303324(+) (recJ) [Streptococcus infantis strain SO]
TTGATAATTCCTACTTATAATTGGCAATTTTCTCCGCAAGTTGAGGATGCGGATTTTACAAAGATTGCCAAGAGTGTAGG
CTTGAGTTCTGAAGTCGCTTGTTTGTTGTTTCAACGTGGAATCAAGGACGAAAGCAGCCTGAAGAAATTTTTAGAACCTT
CTTTGGAAGATTTACATGATCCTTATCTATTACATGATATGGATAAGGCAGTTGATCGTATTCGCCAGGCTGTCGAGCAA
GGAGAATTGATTCTAGTCTATGGTGACTACGATGCAGATGGGATGACTTCGGCTTCGATTGTCAAGGAGAGTTTGGAACA
ATTAGGAGCAGAGTGTCTGGTCTATCTCCCAAATCGCTTTACAGACGGTTATGGTCCAAATGCCAGTGTTTACAAATATT
TCATCGAGCAACAGGGTGTGTCTTTGATTGTGACAGTGGATAATGGAGTTGCTGGGCATGAAGCCATTGACTTGGCTCAG
TCTATGGGAGTGGATGTCATTGTGACAGACCACCACTCCATGCCAGAGGTTTTACCAGGTGCTTATGCAATCGTCCATCC
TGAACATCCAGAAGCAGATTATCCTTTTAAACAATTAGCAGGCTGTGGAGTTGCTTTTAAACTAGCTTGTGCCCTCTTGG
AGGAAGTGCAGGTTGAGTTGCTTGACTTGGTTGCCATTGGAACCATTGCGGATATAGTAAGCCTGACGGATGAAAATCGT
ATCATGGTTCAGTACGGTCTAGAAGTTTTGCGCAATACTCAACGAATTGGTCTCCAAGAACTATTTGAAATTGCAGGAAT
TGCTACTAGTGATATTACAGAAGAAACAGTTGGTTTTCAGTTGGCACCTCGGTTAAATGCCTTGGGGCGCTTGGATGATC
CCAATCCAGCGATTGATTTACTGACTGGCTTTGATGATGAAGAGGTGCATGAAATTGCCCTCATGATTCAAGAAAAAAAT
GAAGAACGCAAGGAAATCGTTCAAGCCATCTATGATGAAGCTAAAAACATGGTAGATCCTAGTAAAAGTGTTCAGGTTTT
GTCAAAGGAAGGCTGGAACCCAGGGGTTCTTGGAATTGTAGCTGGACGCTTACTGGAAGAACTAGGTCAAACAGTTATTG
TTCTGAATATTGAAGATGGTCGTGCCAAGGGAAGCGCACGGAGTATTGAAGCAGTCGATATCTTTGAAGCTTTGGATCCG
CATCGCGCTCTCTTTATCGCCTTTGGTGGCCATGCAGGTGCCGCAGGTATGACGCTCGAGGCTGAACAGTTAGATGCCTT
GTCAGAAATTTTAGAAACCTATGTAAAAGACAAAGGGATAGATGCTAAGGGAAAGAGTAAATTATATCTAGATGAAGAAC
TAGATTTGGAAAGCCTGAGTTTAGATACGGTTAAAAGCTTTGAGAAGTTAGCTCCTTTTGGAATGGACAATCAAAAACCT
GTCTTCTACATTCGAGATTTTCAAGTTGAAAATGCTCGTTCTATGGGAGCAGGAGATAGTCACCTGAAGTTAAAAATTTC
CAAAGGAACTGCGAACTTTGAAGTGGTTGCCTTTGGTCAAGGGTCGAAAGCGACAGAATTTGCGCAGACCAAACAGCTGG
AGTTAGCAGTCACTCTTTCCGTTAACCAATGGAATGGGCAAACAACTCTACAGTTGATGATGGTAGATGCTCGTGTAGAC
GGTGTTCAGCTCTTTAATATTCGTGGGAAGAATGCTGTTCTACCAGACGGAGTGCCAGTGCTTGATTTTGCTGGAGAATT
GCCAGATATTTCATCGAGTCCAGCAGTCGTTGTCAAGAATATCCCAGAAGACATCAGGATTCTTAAGGACATTTTCCAGC
AACATGATTTCTCAGCTGTTTACTTTAAAAATGATATCGAGAAGCCCTACTATTTGACAGGGTATGGCACAAGAGAGCAA
TTTGCAAAGCTCTATAAGACGATATACCAGTTTCCAGAATTCGATATCCGTTATAAATTAAAAGACCTATCAGCTTATCT
TAAAATTGAACAGATTTTACTCGTCAAGATGATTCAAATTTTTGAAGAGCTTGGTTTTGTCACCATTGAAAATGGTGTGA
TGAGGGTTAATAAAGATGCAGCTAAACGGGATATTGCTGAAAGTCAGATTTATCAAAATCTCAAGCAAACTGTTAAAGAC
CAAGAAATGTTGGCACTAGGTACAGTGCAGGAAATCTATGATTTCTTGATGGGAAAATAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(595-735)

DHH family (DHH)

(84-228)

DHHA1 domain (DHHA1)

(317-434)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

84.98

100

0.85
  recJ Bacillus subtilis subsp. subtilis str. 168

37.047

100

0.387