Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPELS_RS02525 Genome accession   NC_017063
Coordinates   510794..512314 (+) Length   506 a.a.
NCBI ID   WP_000611107.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505794..517314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS02495 (HPELS_02530) moaC 505948..506424 (+) 477 WP_001131578.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPELS_RS02500 (HPELS_02535) hpaA 506543..507325 (+) 783 WP_000646636.1 flagellar sheath lipoprotein HpaA -
  HPELS_RS02505 (HPELS_02540) - 507347..508183 (+) 837 WP_001037689.1 outer membrane protein -
  HPELS_RS02510 (HPELS_02545) tig 508296..509651 (+) 1356 WP_001047739.1 trigger factor -
  HPELS_RS02515 (HPELS_02550) clpP 509672..510259 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPELS_RS02520 (HPELS_02555) def 510264..510791 (+) 528 WP_001185831.1 peptide deformylase -
  HPELS_RS02525 (HPELS_02560) comM 510794..512314 (+) 1521 WP_000611107.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPELS_RS02530 (HPELS_02565) - 512339..514399 (+) 2061 WP_001158791.1 heavy metal translocating P-type ATPase -
  HPELS_RS02535 (HPELS_02570) - 514446..515693 (+) 1248 WP_000548827.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57344.41 Da        Isoelectric Point: 8.3899

>NTDB_id=35288 HPELS_RS02525 WP_000611107.1 510794..512314(+) (comM) [Helicobacter pylori ELS37]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIVPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEVQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=35288 HPELS_RS02525 WP_000611107.1 510794..512314(+) (comM) [Helicobacter pylori ELS37]
ATGATTAACACGATATTTTGCACGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACCTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGATATTGCCATTAAGCGCCCCCATGCTAAAA
TCATTGTGCCTAAGGCTAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATTTTGCCTCCATTGAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAGCAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAATTTTGAAG
TGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment