Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GOM46_RS00145 Genome accession   NZ_CP046525
Coordinates   33209..33979 (+) Length   256 a.a.
NCBI ID   WP_235083604.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28209..38979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS00120 (GOM46_00120) abpA 28707..29351 (+) 645 WP_235083600.1 amylase-binding adhesin AbpA -
  GOM46_RS00125 (GOM46_00125) srtB 29428..30270 (+) 843 WP_235083601.1 class B sortase, LPKTxAVK-specific -
  GOM46_RS00130 (GOM46_00130) - 30412..30849 (+) 438 WP_006150501.1 CoA-binding protein -
  GOM46_RS00135 (GOM46_00135) - 30878..31888 (-) 1011 WP_235083602.1 YeiH family protein -
  GOM46_RS00140 (GOM46_00140) - 32043..33212 (+) 1170 WP_235083603.1 pyridoxal phosphate-dependent aminotransferase -
  GOM46_RS00145 (GOM46_00145) recO 33209..33979 (+) 771 WP_235083604.1 DNA repair protein RecO Machinery gene
  GOM46_RS00150 (GOM46_00150) plsX 33976..34968 (+) 993 WP_006150504.1 phosphate acyltransferase PlsX -
  GOM46_RS00155 (GOM46_00155) - 34970..35206 (+) 237 WP_235083605.1 acyl carrier protein -
  GOM46_RS00160 (GOM46_00160) cysK 35260..36186 (-) 927 WP_006150537.1 cysteine synthase A -
  GOM46_RS00165 (GOM46_00165) - 36333..36968 (-) 636 WP_235083606.1 YigZ family protein -
  GOM46_RS00170 (GOM46_00170) comFA/cflA 37024..38322 (+) 1299 WP_235083607.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29792.19 Da        Isoelectric Point: 5.1848

>NTDB_id=352873 GOM46_RS00145 WP_235083604.1 33209..33979(+) (recO) [Streptococcus infantis strain SO]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHASKSKLAPVIQPLVLARFLLKVNDDGLSYIEDYHEVKTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEEGLDYQVLTNIFEIQILTRFGISLNFNECTFCHRVG
QAFDFSFKYGACLCPDHYHEDEKRCHLNPNIPYLLNQFQAIDFEILETISLKSEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=352873 GOM46_RS00145 WP_235083604.1 33209..33979(+) (recO) [Streptococcus infantis strain SO]
ATGATTCAGTCTATTACGAGTCAAGGCCTGGTACTCTACAATCGTAACTTTCGTGAGGATGATAAGCTGGTCAAAATCTT
TACAGAGCAGGCTGGGAAACGGATGTTTTTTGTGAAACATGCTAGCAAATCTAAACTTGCTCCAGTCATTCAACCCTTGG
TGCTGGCTCGTTTTCTCTTAAAGGTTAACGATGATGGACTCAGCTATATCGAGGATTACCATGAGGTAAAGACTTTTCCG
AAAATCAATAGCGACCTTTTTGTTATGGCATATGCAACCTATGTTGCAGCCTTGGCAGATGCGAGTTTGCAGGATAATCA
GCAGGACGCACCCTTATTTGCTTTTTTGCAAAAAACTTTGGAGTTGATGGAAGAGGGCTTAGACTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACACGTTTTGGGATTAGTCTGAATTTTAATGAGTGTACATTTTGCCACCGTGTGGGA
CAAGCCTTTGATTTTTCTTTCAAGTACGGTGCCTGCCTTTGCCCAGATCATTATCATGAAGATGAAAAACGATGCCATTT
GAATCCCAATATTCCTTATCTACTTAATCAATTTCAAGCCATTGATTTTGAGATTTTGGAGACTATCTCGCTCAAGTCTG
AAATCAAGCAGGACTTGCGTAAGTTTATAGATCAAATCTACGAGGAATATGTCGGTATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCCGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

92.578

100

0.926