Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   E4K03_RS03815 Genome accession   NZ_CP038262
Coordinates   782548..783075 (+) Length   175 a.a.
NCBI ID   WP_004833663.1    Uniprot ID   A0A0J8UZZ4
Organism   Acinetobacter baumannii strain LEV1449/17Ec     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 783490..784709 782548..783075 flank 415


Gene organization within MGE regions


Location: 782548..784709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K03_RS03815 (E4K03_03815) pilP 782548..783075 (+) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  E4K03_RS03820 (E4K03_03820) - 783138..783437 (+) 300 Protein_726 AMIN domain-containing protein -
  E4K03_RS03825 (E4K03_03825) - 783490..784709 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19465.70 Da        Isoelectric Point: 8.9898

>NTDB_id=352860 E4K03_RS03815 WP_004833663.1 782548..783075(+) (pilP) [Acinetobacter baumannii strain LEV1449/17Ec]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTLVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=352860 E4K03_RS03815 WP_004833663.1 782548..783075(+) (pilP) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCTTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTGGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UZZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709

Multiple sequence alignment