Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GOM47_RS08010 Genome accession   NZ_CP046524
Coordinates   1577685..1578281 (+) Length   198 a.a.
NCBI ID   WP_235080462.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572685..1583281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07985 (GOM47_07980) mapZ 1573588..1575036 (-) 1449 WP_235080458.1 cell division site-positioning protein MapZ -
  GOM47_RS07990 (GOM47_07985) - 1575049..1576206 (-) 1158 WP_235080459.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GOM47_RS08000 (GOM47_07995) gpsB 1576695..1577021 (-) 327 WP_235080460.1 cell division regulator GpsB -
  GOM47_RS08005 (GOM47_08000) - 1577091..1577618 (-) 528 WP_235080461.1 SLOG family protein -
  GOM47_RS08010 (GOM47_08005) recU 1577685..1578281 (+) 597 WP_235080462.1 Holliday junction resolvase RecU Machinery gene
  GOM47_RS08015 (GOM47_08010) pbp1a 1578278..1580428 (+) 2151 WP_235080463.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23004.46 Da        Isoelectric Point: 9.7999

>NTDB_id=352841 GOM47_RS08010 WP_235080462.1 1577685..1578281(+) (recU) [Streptococcus oralis strain SOT]
MVNYPHKISSLKRQAPLSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFASQQETYLLPAVDLIRFYHQDKGQK
SMPLGYIRENGYKIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352841 GOM47_RS08010 WP_235080462.1 1577685..1578281(+) (recU) [Streptococcus oralis strain SOT]
ATGGTCAACTATCCACATAAAATTTCATCACTGAAGAGACAAGCGCCCCTTTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCGGTTATCCATAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCCTACTTCAGACAGGCCTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACGAGGCAAAAACATGCGATTCC
GATGAAGAATTTCCATCTCCATCAGATCCAACACATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTCCTTCTTC
ACTTTGCTTCTCAGCAAGAAACTTATTTATTGCCGGCTGTTGACCTGATTCGTTTCTATCATCAAGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTAGAGAAAATGGATATAAGATTGAGCCTGGTGCCTTTCCCCAGATTCCCTATCTCGATAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.208

99.495

0.47