Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GOM47_RS07365 Genome accession   NZ_CP046524
Coordinates   1447112..1449334 (-) Length   740 a.a.
NCBI ID   WP_235081284.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442112..1454334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07350 (GOM47_07345) - 1443621..1444322 (-) 702 WP_235080368.1 M57 family metalloprotease -
  GOM47_RS07355 (GOM47_07350) - 1444429..1445208 (-) 780 WP_235080369.1 alpha/beta hydrolase -
  GOM47_RS07360 (GOM47_07355) - 1445277..1446938 (-) 1662 WP_235080370.1 ribonuclease J -
  GOM47_RS07365 (GOM47_07360) recJ 1447112..1449334 (-) 2223 WP_235081284.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GOM47_RS07370 (GOM47_07365) - 1449512..1450270 (+) 759 WP_084921371.1 amino acid ABC transporter ATP-binding protein -
  GOM47_RS07375 (GOM47_07370) - 1450281..1451075 (+) 795 WP_235080371.1 transporter substrate-binding domain-containing protein -
  GOM47_RS07380 (GOM47_07375) - 1451088..1451765 (+) 678 WP_049501479.1 amino acid ABC transporter permease -
  GOM47_RS07385 (GOM47_07380) - 1451775..1452434 (+) 660 WP_235080372.1 amino acid ABC transporter permease -
  GOM47_RS07390 (GOM47_07385) - 1452565..1453347 (+) 783 WP_235080373.1 DUF4037 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82691.16 Da        Isoelectric Point: 4.3410

>NTDB_id=352832 GOM47_RS07365 WP_235081284.1 1447112..1449334(-) (recJ) [Streptococcus oralis strain SOT]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILIYGDYDADGMTSASIIKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGITANEVTEETVGFQLAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKPMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVENLSDLSQVLEDYVREKGADTSGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
IFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFSGEVPKLVNSEAVVVKTIPEDITLLKTIFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FTKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIAESHIYQNLKQTVKN
QEMMALGTVQEMYNFLMEEN

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=352832 GOM47_RS07365 WP_235081284.1 1447112..1449334(-) (recJ) [Streptococcus oralis strain SOT]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
GCTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGGATGAAGAAAGTCTAAAGAAGTTTTTAGAACCTT
CTTTAGAGGACTTACATGATCCCTATCTGCTCCATGATATGGATAAGGCAGTGGAACGGATTCGTCAGGCTATTGAAGAA
GGGGAAAACATTCTTATCTATGGAGACTACGATGCGGATGGTATGACTTCAGCTTCGATTATTAAGGAAAGTTTGGAGCA
GCTTGGCGCCGAGTGCCGTGTTTATTTGCCCAATCGTTTTACTGATGGCTATGGTCCCAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACAGTGGACAATGGAGTTGCTGGTCACGAGGCCATTGAACTGGCCCAG
TCCATGGGAGTAGATGTCATTGTGACCGACCACCATTCCATGCCTGAAACCTTGCCAGATGCCTATGCGATTGTTCACCC
CGAGCATCCAGATGCGGACTATCCCTTCAAACAGTTGGCTGGTTGCGGAGTGGCTTTCAAGCTGGCTTGCGCCCTTTTAG
AGGAAGTGCAAGTGGAGTTGCTCGATTTGGTCGCTATCGGTACCATTGCGGATATGGTAAGTTTGACGGATGAAAACCGT
ATTTTGGTTCAATATGGTCTGGAAATGTTGGGGCATACTCAGCGCATTGGACTACAAGAAATGCTGGACATGGCTGGGAT
TACTGCTAATGAAGTGACAGAAGAAACGGTTGGTTTTCAGCTTGCGCCGCGTTTAAATGCCTTAGGCCGCTTGGACGACC
CCAATCCAGCTATTGATTTGCTGACTGGGTTTGACGACGAGGAAGCGCATGAGATTGCCCTCATGATTCATCAGAAAAAT
GAAGAACGTAAGGAAATCGTCCAGTCTATCTATGAAGAAGCCAAGCCCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTTGCTGGGCGCTTGCTGGAAGAACTGGGTCAGACAGTCATCG
TTCTGAATATAGAAGACGGTCGTGCCAAGGGTAGCGCTCGCAGTGTGGAAGCGGTCGATATTTTTGAAGCTCTAGATCCC
CATCGAGATCTCTTTATAGCCTTTGGAGGCCATGCTGGTGCAGCAGGAATGACGCTGGAAGTTGAGAATCTTTCAGATTT
ATCTCAGGTCTTGGAAGACTATGTCCGTGAAAAAGGCGCAGATACTAGTGGCAAGAATAAGTTAAATCTAGATGAGGAGT
TGGATTTGGAGACTCTTAGTTTAGAAACGGTCAAAAGCTTTGAACGCTTGGCGCCTTTTGGAATGGACAATCAGAAACCT
ATCTTTTATATCAAGGATTTTCATGTCGAAAGCGCTAGAACCATGGGGGCAGGTAATGCCCACCTCAAACTGAAAATTTC
TAAGGGTGAGGCGAGTTTTGAAGTGGTGGCTTTTGGTCAAGGTAGATGGGCAACAGAATTTGCTCAAACAAAAAACTTAG
AATTGGCAGTCACCTTGTCTGTCAATCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTAGATGCGCGTGTGGAA
GGCGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTATTGCCAGAAGGGGTTCCAGTCTTGGATTTCTCTGGAGAGGT
GCCAAAATTGGTGAATAGTGAGGCGGTTGTCGTAAAAACCATTCCTGAGGATATTACCTTACTGAAGACTATTTTTCAGG
AACAGAATTTCTCAGCTGTCTATTTCAAAAATGACATTGACAAGGCCTACTATCTTACAGGTTATGGGACCAGAGAGCAG
TTTACTAAATTGTACAAGACCATTTACCAGTTTCCAGAGTTTGATATTCGCTATAAGCTGAAGGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATTCAAGTATTTGAAGAACTGGGCTTTGTAACTATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCGCCGAAAAGGGAGATTGCTGAAAGTCATATTTACCAAAATCTCAAACAAACTGTAAAAAAT
CAAGAAATGATGGCACTGGGGACCGTGCAAGAAATGTATAATTTTTTAATGGAAGAAAACTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-434)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.399

99.865

0.953
  recJ Bacillus subtilis subsp. subtilis str. 168

37.242

100

0.391

Multiple sequence alignment