Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GOM47_RS07250 Genome accession   NZ_CP046524
Coordinates   1425621..1427357 (-) Length   578 a.a.
NCBI ID   WP_235080355.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420621..1432357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07225 (GOM47_07220) - 1420724..1421875 (-) 1152 WP_235080353.1 MFS transporter -
  GOM47_RS07230 (GOM47_07225) - 1421988..1422611 (-) 624 WP_093586483.1 Pr6Pr family membrane protein -
  GOM47_RS07235 (GOM47_07230) - 1422614..1422952 (-) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  GOM47_RS07240 (GOM47_07235) - 1423163..1423681 (-) 519 WP_093586481.1 Dps family protein -
  GOM47_RS07245 (GOM47_07240) rcrQ 1423831..1425612 (-) 1782 WP_235080354.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS07250 (GOM47_07245) rcrP 1425621..1427357 (-) 1737 WP_235080355.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS07255 (GOM47_07250) tpiA 1427537..1428295 (-) 759 WP_061597896.1 triose-phosphate isomerase -
  GOM47_RS07260 (GOM47_07255) - 1428392..1429069 (-) 678 WP_235080356.1 DnaD domain-containing protein -
  GOM47_RS07265 (GOM47_07260) metA 1429078..1430022 (-) 945 WP_235080357.1 homoserine O-acetyltransferase MetA -
  GOM47_RS07270 (GOM47_07265) - 1430209..1430721 (-) 513 WP_061417353.1 adenine phosphoribosyltransferase -
  GOM47_RS07275 (GOM47_07270) - 1430841..1431278 (-) 438 WP_235080358.1 GNAT family N-acetyltransferase -
  GOM47_RS07280 (GOM47_07275) rplA 1431352..1432041 (-) 690 WP_001085675.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64976.31 Da        Isoelectric Point: 6.2657

>NTDB_id=352830 GOM47_RS07250 WP_235080355.1 1425621..1427357(-) (rcrP) [Streptococcus oralis strain SOT]
MLYIWSYLKKYPKWLFLDFFGAVFFVIVNLGLPTVLARMIDEGVNKGNEQQLYVWATIMLVIILCGTLGRIVLAYAASKL
TTNMVKDMRDDLYAKLQEYSHHEYEKIGVSSLVTRITSDAFVLMQFAEQTLKLGVITPMMMLSSILMIFLTSPSLAWIVA
FAVPFLAVVVIYVAVKTRPLSEKQQATLDKINQYARENLMGLRVIRAFAREEFQEERFAGQNAVYAANSNRLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPIKQGSLQIGDLVAFIEYSFHALLSFLFLSNLFTMYPRTAVSSERLKEVMDMPISIDPNE
GGVRETATHGYLEFENVTFAYPGETENPVLHNISFSAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGKIKVDGVDVRD
YRLKSLRQKIGFIPQKALLFTGTIAENIRYGKEDASHKDLHQAADVAQAKDFIESREEGFATHLAEGGSNLSGGQKQRLS
IARAVIKNPDIYIFDDSFSALDYRTDAILRRRLKEVTQNATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMEIND
IYREIAESQLKNASLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=352830 GOM47_RS07250 WP_235080355.1 1425621..1427357(-) (rcrP) [Streptococcus oralis strain SOT]
ATGCTCTATATTTGGTCTTATTTGAAAAAATATCCCAAGTGGTTATTCTTGGATTTCTTTGGAGCGGTTTTCTTTGTTAT
TGTCAATCTTGGACTGCCAACTGTTCTGGCTCGGATGATTGATGAAGGTGTGAATAAAGGGAATGAACAGCAATTGTATG
TTTGGGCTACAATTATGCTGGTGATTATCCTATGTGGAACCTTGGGGCGTATAGTCTTAGCCTACGCTGCTAGTAAGCTG
ACGACCAATATGGTCAAGGATATGAGGGATGATCTCTATGCCAAATTACAAGAGTATTCTCATCATGAATATGAAAAGAT
TGGAGTGTCTTCACTGGTTACTCGCATTACCAGTGATGCCTTTGTTCTCATGCAGTTTGCAGAACAGACCTTAAAACTGG
GTGTCATCACCCCCATGATGATGCTGTCTAGTATCTTAATGATCTTCCTGACCAGTCCGTCATTAGCCTGGATAGTGGCC
TTTGCAGTACCTTTCTTAGCTGTGGTGGTCATTTATGTAGCGGTCAAGACTCGACCATTATCAGAGAAACAGCAGGCTAC
CTTAGATAAGATAAACCAATATGCCAGGGAAAATCTAATGGGACTCCGTGTCATTCGTGCCTTTGCCCGTGAGGAGTTTC
AAGAGGAACGCTTTGCAGGACAAAATGCAGTCTATGCAGCTAATTCCAATCGTCTGTTTAAACTAACCGGTTTGACGGAA
CCCTTGTTTGTTCAGATTATCATTGCCATGATTGTAGCTATTGTCTGGTTTGCTCTGGACCCTATCAAACAAGGAAGCTT
GCAAATTGGGGACCTAGTGGCCTTTATCGAATATAGTTTCCACGCCCTCTTGTCCTTCCTTTTCCTATCCAATCTCTTCA
CCATGTATCCTCGTACAGCGGTTTCGAGTGAACGCTTGAAAGAAGTCATGGATATGCCGATTTCTATTGATCCCAATGAA
GGAGGGGTCAGAGAGACAGCAACCCACGGATATTTGGAATTTGAAAATGTCACCTTTGCCTATCCTGGCGAGACGGAAAA
TCCTGTTTTGCACAATATTTCTTTCAGTGCTAAACCAGGTGAAACCATTGCTTTTATCGGATCGACCGGATCTGGAAAAT
CCTCTCTTGTGCAATTGATTCCTCGTTTTTACGATGTCACGCTTGGTAAAATAAAGGTTGATGGTGTTGATGTGAGGGAT
TACCGTCTCAAGTCTCTTCGTCAAAAGATTGGTTTTATCCCGCAGAAGGCCTTACTCTTTACAGGAACTATCGCTGAAAA
TATCCGCTATGGGAAGGAAGATGCTAGTCACAAAGACCTACATCAGGCAGCGGATGTGGCGCAAGCCAAAGATTTTATCG
AAAGCCGAGAAGAAGGCTTTGCGACCCATCTAGCCGAAGGTGGAAGCAACCTTTCTGGAGGACAGAAACAACGTCTCTCA
ATTGCCCGAGCTGTTATAAAGAATCCTGATATCTATATTTTTGACGATTCTTTCTCAGCCTTGGATTATCGTACGGATGC
CATTTTGCGCCGTCGTCTCAAGGAAGTAACACAGAATGCAACGGTTTTAATTGTTGCTCAACGTGTCGGAACCATCATGG
ATGCGGACCAGATCATCGTTCTGGATAAGGGTGAAATCGTGGGTCGCGGTCGCCATGAGGAATTGATGGAAATCAATGAT
ATCTATCGTGAAATTGCTGAGTCGCAGTTGAAAAATGCATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(16-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.811

91.696

0.365