Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM47_RS07245 Genome accession   NZ_CP046524
Coordinates   1423831..1425612 (-) Length   593 a.a.
NCBI ID   WP_235080354.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418831..1430612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07215 (GOM47_07210) - 1419112..1419885 (-) 774 WP_235080351.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GOM47_RS07220 (GOM47_07215) truA 1419875..1420624 (-) 750 WP_235080352.1 tRNA pseudouridine(38-40) synthase TruA -
  GOM47_RS07225 (GOM47_07220) - 1420724..1421875 (-) 1152 WP_235080353.1 MFS transporter -
  GOM47_RS07230 (GOM47_07225) - 1421988..1422611 (-) 624 WP_093586483.1 Pr6Pr family membrane protein -
  GOM47_RS07235 (GOM47_07230) - 1422614..1422952 (-) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  GOM47_RS07240 (GOM47_07235) - 1423163..1423681 (-) 519 WP_093586481.1 Dps family protein -
  GOM47_RS07245 (GOM47_07240) rcrQ 1423831..1425612 (-) 1782 WP_235080354.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS07250 (GOM47_07245) rcrP 1425621..1427357 (-) 1737 WP_235080355.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS07255 (GOM47_07250) tpiA 1427537..1428295 (-) 759 WP_061597896.1 triose-phosphate isomerase -
  GOM47_RS07260 (GOM47_07255) - 1428392..1429069 (-) 678 WP_235080356.1 DnaD domain-containing protein -
  GOM47_RS07265 (GOM47_07260) metA 1429078..1430022 (-) 945 WP_235080357.1 homoserine O-acetyltransferase MetA -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66659.05 Da        Isoelectric Point: 5.9805

>NTDB_id=352829 GOM47_RS07245 WP_235080354.1 1423831..1425612(-) (rcrQ) [Streptococcus oralis strain SOT]
MKTQSSLARLWSYLKAYRFSVFFAVFLKVLSVVMSVLEPFVLGLAITELTKNLLDMAKGLSGASINTGYIGTVLIIYLFR
GLLYELGSYYSNYFMTNAVQSMTQDLRNEMTEKINRIPVFFFDKHQFGDLLGRFTSDVETVSNALQQSFLQIVNAVLTIV
LVMGMVLYLNFQLAIVVILSIPVTYFGARSILKRSQPYFKEQAAILGRMNGYVQENLTGFNVLKLYSREETSHKEFSKIT
DDLQRVGFKASFISGLMMPALHAVSDLTYLIVAVLGGLQVIAGRLTVGNMQAFVQYVWQVSQPIQNITQLAGQMQSAKSS
LDRIFDILDETEEVEGEELEILEPLTGQVTFQHVDFQYVENKPLIRDFNLEVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTAGAILVDGQDIRQLSRQDYRRQFGMVLQDAWLYEGTIKENLRFGNLNASDEEIIEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKEGQ
IIEQGNHESLLQAKGFYYDLYQSQFSSKSGQSS

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=352829 GOM47_RS07245 WP_235080354.1 1423831..1425612(-) (rcrQ) [Streptococcus oralis strain SOT]
ATGAAAACACAATCTAGTTTGGCTCGTTTGTGGAGCTATTTAAAAGCCTACCGTTTTTCTGTCTTCTTTGCCGTCTTTCT
AAAAGTTTTGAGTGTGGTCATGAGTGTCTTAGAACCTTTTGTTTTGGGGCTAGCCATTACGGAGTTGACAAAAAACCTCT
TAGATATGGCTAAGGGCCTTTCAGGTGCTAGTATCAATACTGGCTACATCGGAACGGTTTTAATCATTTACCTCTTTAGA
GGTCTCTTGTATGAACTTGGTTCTTATTATTCCAACTATTTCATGACTAATGCGGTCCAGTCCATGACCCAAGATCTGCG
AAATGAAATGACTGAAAAAATCAATCGTATCCCTGTATTTTTCTTTGACAAACACCAATTTGGTGATTTATTGGGACGCT
TTACCAGTGACGTTGAGACAGTGTCCAACGCTCTTCAACAGTCTTTCCTCCAAATTGTCAATGCTGTTCTGACGATTGTC
CTTGTCATGGGAATGGTTTTATACTTGAACTTCCAACTGGCTATAGTGGTGATTCTATCCATTCCAGTGACCTATTTTGG
TGCTAGAAGTATCCTGAAACGTTCTCAGCCTTATTTTAAAGAACAGGCGGCTATTTTAGGACGGATGAATGGCTATGTGC
AGGAAAATCTTACAGGTTTTAATGTCTTGAAACTCTATAGTCGTGAGGAAACTTCTCATAAAGAATTTTCTAAGATTACA
GACGATCTCCAACGTGTTGGTTTTAAAGCCAGCTTTATCTCTGGACTCATGATGCCAGCCCTCCATGCTGTATCGGACTT
GACCTATCTGATTGTTGCAGTTCTTGGTGGTTTGCAAGTGATTGCGGGTCGTTTGACAGTGGGGAATATGCAGGCCTTTG
TTCAGTATGTCTGGCAGGTTAGCCAGCCTATCCAAAACATTACACAACTTGCGGGTCAAATGCAAAGTGCCAAGTCTTCG
TTAGACCGTATCTTCGACATCTTGGATGAGACTGAGGAAGTAGAGGGAGAAGAACTCGAAATCCTTGAACCCTTAACAGG
TCAGGTGACCTTCCAACATGTTGACTTCCAGTATGTTGAAAACAAGCCATTGATTCGAGACTTTAATCTAGAAGTTCAAC
CGGGAGAGATGGTGGCGATTGTTGGTCCTACTGGAGCTGGTAAAACGACCTTAATCAATCTGCTTATGCGCTTTTACGAT
GTCACAGCAGGCGCAATCTTGGTTGACGGGCAGGATATTCGCCAGTTGTCACGTCAAGACTATCGCCGTCAGTTTGGGAT
GGTCTTGCAGGATGCTTGGCTTTATGAAGGTACGATCAAAGAAAACCTACGTTTTGGAAATCTTAACGCCAGTGACGAGG
AAATAATAGAAGCTGCCAAAGCGGCAAATGTAGACCACTTTATCCGAACTCTTCCTGGTGGTTACAACATGGAGATGAAC
CAAGAGTCAAGTAATATTTCCCTCGGACAAAAACAACTCTTGACCATCGCGCGTGCTCTCCTAGCCAATCCTAAAATTCT
TATTCTGGATGAAGCGACTTCCTCTGTTGACACCCGTTTGGAACTCTTGATTCAAAAAGCTATGAAACGCTTGATGAAGG
GAAGAACCAGCTTTGTCATCGCCCACCGTCTCTCTACCATTCAAGAAGCAGACAAGATTCTCGTTCTTAAGGAAGGACAG
ATTATTGAGCAGGGAAATCATGAAAGTTTGCTCCAAGCAAAAGGCTTTTATTATGATTTGTACCAAAGCCAATTTTCAAG
TAAGTCTGGGCAATCCAGCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.088

99.831

0.44