Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GOM47_RS05035 Genome accession   NZ_CP046524
Coordinates   987196..988266 (-) Length   356 a.a.
NCBI ID   WP_235080015.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982196..993266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS05020 (GOM47_05025) - 983146..984189 (+) 1044 WP_235080013.1 dihydrolipoamide acetyltransferase -
  GOM47_RS05025 (GOM47_05030) lpdA 984234..985937 (+) 1704 WP_265324772.1 dihydrolipoyl dehydrogenase -
  GOM47_RS05030 (GOM47_05035) - 986133..987122 (+) 990 WP_235080014.1 lipoate--protein ligase -
  GOM47_RS05035 (GOM47_05040) xerS 987196..988266 (-) 1071 WP_235080015.1 tyrosine recombinase XerS Machinery gene
  GOM47_RS05040 (GOM47_05045) - 988445..988882 (-) 438 WP_235080016.1 MepB family protein -
  GOM47_RS05045 (GOM47_05050) - 988948..989688 (-) 741 WP_235080017.1 CPBP family intramembrane glutamic endopeptidase -
  GOM47_RS05050 (GOM47_05055) - 989741..991291 (-) 1551 WP_235080018.1 ClC family H(+)/Cl(-) exchange transporter -
  GOM47_RS05055 (GOM47_05060) - 991304..992083 (-) 780 WP_235080019.1 ribonuclease HII -
  GOM47_RS05060 (GOM47_05065) ylqF 992070..992921 (-) 852 WP_138100305.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41253.31 Da        Isoelectric Point: 9.6076

>NTDB_id=352811 GOM47_RS05035 WP_235080015.1 987196..988266(-) (xerS) [Streptococcus oralis strain SOT]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESDISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQVYPQQLSNRALSSFNRNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=352811 GOM47_RS05035 WP_235080015.1 987196..988266(-) (xerS) [Streptococcus oralis strain SOT]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCTTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTCCCCTATAGTTTTACAACCTTGTACGAATACCTGAAGGAATACGATCGATTTTTTAGCTGGGTTTTGG
AATCTGATATTTCAAACGCTGATAAAATTTCTGACATTCCTTTATCGGTTTTAGAAAATATGTCTAAAAAAGACATGGAA
TCCTTTATCCTATATCTACGAGAACGACCTTTGCTGAATGCTAATACAACCAAACAAGGTGTTTCACAGACAACTATCAA
TCGGACCTTATCAGCTCTTTCCAGTCTTTACAAGTATCTAACTGAGGAAGTTGAAAACGACCAAGGGGAGCCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACTAAGAAAAAGAAAGAAACACTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTGGGTGATGAAACAGAGGGTTTTCTAACTTATATCGACCAAGTGTACCCACAACAACTCTCAAATCGCGCTCT
CTCGTCATTCAATAGAAATAAGGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTCCGATTATCTGAAG
CTGTTAATCTGGATCTAAGAGACCTTAATCTCAAAATGATGGTTATTGATGTCACTCGAAAAGGTGGCAAACGTGACTCG
GTCAATGTCGCTGCCTTTGCTAAGCCTTACCTAGAGAATTATCTCGCCATTCGAAATCAACGATATAAGACTGAAAAGAC
GGATACAGCACTCTTTCTGACACTCTACCGAGGTGTTCCGAACCGTATTGATGCTTCCAGCGTTGAGAAAATGGTTGCTA
AGTACTCTGAGGATTTCAAAGTGCGTGTAACTCCCCATAAACTACGGCATACCCTAGCAACTAGGCTCTATGATGCGACT
AAATCGCAAGTTTTAGTCAGTCACCAGCTAGGACACGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTCTAGATAGTTTGTAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(187-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(70-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986