Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E4K02_RS04385 | Genome accession | NZ_CP038258 |
| Coordinates | 869982..870362 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 39741 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 864982..875362
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4K02_RS04355 (E4K02_04355) | kdsB | 865885..866646 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| E4K02_RS04360 (E4K02_04360) | - | 866658..867638 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| E4K02_RS04365 (E4K02_04365) | - | 867650..867991 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| E4K02_RS04370 (E4K02_04370) | - | 868009..868782 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| E4K02_RS04375 (E4K02_04375) | - | 868820..869428 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| E4K02_RS04380 (E4K02_04380) | - | 869438..869992 (+) | 555 | WP_004841361.1 | type II secretion system protein | - |
| E4K02_RS04385 (E4K02_04385) | xcpV | 869982..870362 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E4K02_RS04390 (E4K02_04390) | xcpW | 870362..871063 (+) | 702 | WP_109267335.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E4K02_RS04395 (E4K02_04395) | gspK | 871063..872022 (+) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| E4K02_RS04400 (E4K02_04400) | - | 872252..872848 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| E4K02_RS04405 (E4K02_04405) | ung | 872899..873612 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| E4K02_RS04410 (E4K02_04410) | - | 873609..874733 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E4K02_RS04415 (E4K02_04415) | tadA | 874754..875257 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=352808 E4K02_RS04385 WP_000836911.1 869982..870362(+) (xcpV) [Acinetobacter baumannii strain 39741]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=352808 E4K02_RS04385 WP_000836911.1 869982..870362(+) (xcpV) [Acinetobacter baumannii strain 39741]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |