Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E4K71_RS10055 Genome accession   NZ_CP038255
Coordinates   2194826..2196211 (+) Length   461 a.a.
NCBI ID   WP_135079165.1    Uniprot ID   -
Organism   Terasakiella sp. SH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189826..2201211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K71_RS10030 - 2189999..2190253 (-) 255 WP_240796787.1 GIY-YIG nuclease family protein -
  E4K71_RS10035 - 2190426..2192099 (+) 1674 WP_240796788.1 replicative DNA helicase -
  E4K71_RS10040 alr 2192177..2193220 (+) 1044 WP_135079159.1 alanine racemase -
  E4K71_RS10045 - 2193236..2194009 (+) 774 WP_135079161.1 ABC transporter permease -
  E4K71_RS10050 - 2194015..2194788 (+) 774 WP_135079163.1 ATP-binding cassette domain-containing protein -
  E4K71_RS10055 radA 2194826..2196211 (+) 1386 WP_135079165.1 DNA repair protein RadA Machinery gene
  E4K71_RS10060 - 2196241..2196918 (+) 678 WP_135079167.1 CvpA family protein -
  E4K71_RS10065 purF 2196948..2198432 (+) 1485 WP_135079169.1 amidophosphoribosyltransferase -
  E4K71_RS10070 - 2198432..2199145 (+) 714 WP_135079171.1 SDR family NAD(P)-dependent oxidoreductase -
  E4K71_RS10075 - 2199189..2199458 (-) 270 WP_135079173.1 hypothetical protein -
  E4K71_RS10080 - 2199628..2200368 (-) 741 WP_135079175.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49398.72 Da        Isoelectric Point: 7.3295

>NTDB_id=352794 E4K71_RS10055 WP_135079165.1 2194826..2196211(+) (radA) [Terasakiella sp. SH-1]
MPKPKTTFVCQSCGASYNKWQGQCTACNEWNTLSEEAAPEAIPKGMGTARGRTIEFVALEGETKTPPRKVSGIGEFDRVC
GGGLVPGSVILVGGDPGIGKSTILLQVMATLSAKYDCAYISGEEAIDQVRLRARRLGHEKAKVKLASATNVRNILTTLAE
EKPDVVVIDSIQTLYIDTIDSAPGTVSQVRSSANELIRDAKKHGYVLFIVGHVTKEGTIAGPRVLEHMVDTVLYFEGDRG
HQFRILRGVKNRFGATDEIGVFEMTEGGLQEVPNPSALFLSDRKGDVTGSCVFAGIEGSRPMLVEVQALLSPSALATPRR
AVVGWDSSRLAMIMAVFDTRCGLGMGGHDVYLNIAGGLKVNEPAADLSVAAALASSLSGVAVPQETVIFGEIGLSGEVRA
VGQTESRLKEAAKLGFTRAIIPERQKRGKKEKDKGLKDSGLEIWEIGHVQELLSFFPMKDK

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=352794 E4K71_RS10055 WP_135079165.1 2194826..2196211(+) (radA) [Terasakiella sp. SH-1]
ATGCCAAAACCCAAAACCACCTTCGTCTGTCAGTCCTGTGGCGCTTCTTATAACAAGTGGCAGGGCCAGTGTACCGCTTG
TAATGAATGGAACACCCTGTCAGAAGAGGCCGCCCCCGAAGCCATCCCGAAAGGCATGGGCACGGCCCGTGGGCGCACGA
TTGAATTTGTTGCCCTTGAAGGGGAAACAAAAACACCGCCGCGCAAAGTCTCCGGCATTGGGGAATTTGACCGGGTTTGT
GGCGGTGGTTTGGTGCCGGGTTCTGTCATTCTGGTTGGCGGCGATCCCGGGATTGGGAAATCCACGATCTTATTGCAGGT
CATGGCGACCTTATCGGCCAAATATGACTGTGCTTATATCAGTGGGGAGGAAGCCATTGATCAGGTGCGTCTACGCGCAC
GTCGTCTGGGCCATGAAAAGGCCAAGGTCAAACTGGCCTCAGCCACCAATGTGCGCAACATCCTGACCACATTGGCCGAA
GAAAAACCCGATGTGGTGGTCATCGATTCCATTCAAACCCTTTATATCGACACTATCGACAGTGCACCGGGCACGGTCTC
TCAAGTGCGTTCCAGTGCCAATGAACTGATCCGCGACGCCAAGAAACACGGCTATGTGCTGTTTATCGTCGGCCATGTCA
CCAAGGAAGGGACCATTGCTGGCCCACGTGTGTTGGAACATATGGTTGATACCGTGCTTTATTTTGAAGGTGATCGCGGC
CATCAGTTCCGTATCCTGCGTGGGGTGAAAAACCGTTTTGGGGCCACCGACGAAATCGGCGTGTTTGAAATGACCGAAGG
CGGCCTGCAAGAAGTGCCCAATCCTTCCGCCCTGTTCCTGTCTGATCGCAAAGGGGATGTGACAGGATCTTGCGTTTTTG
CCGGGATTGAAGGCTCCCGCCCCATGTTGGTAGAGGTTCAGGCCCTGCTGTCGCCTTCTGCCCTTGCCACACCACGTCGC
GCCGTTGTGGGCTGGGACAGTTCACGCCTTGCCATGATCATGGCTGTGTTTGATACCCGATGTGGGCTGGGCATGGGAGG
CCATGATGTGTACCTCAATATTGCAGGTGGGTTGAAGGTTAATGAACCCGCAGCCGATTTATCTGTTGCCGCCGCCCTTG
CCTCTAGCTTAAGCGGTGTGGCTGTCCCACAGGAAACCGTGATCTTTGGTGAAATTGGGCTATCAGGTGAAGTGCGTGCC
GTTGGTCAAACAGAATCGCGATTAAAAGAGGCTGCGAAACTGGGTTTCACCCGCGCAATTATCCCTGAACGCCAAAAACG
AGGCAAAAAAGAAAAAGACAAAGGCTTGAAAGATAGCGGACTTGAAATCTGGGAGATCGGACATGTGCAAGAACTATTGT
CTTTCTTCCCAATGAAGGATAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.455

99.566

0.492
  radA Streptococcus mitis NCTC 12261

48.753

95.662

0.466
  radA Streptococcus pneumoniae Rx1

48.526

95.662

0.464
  radA Streptococcus pneumoniae D39

48.526

95.662

0.464
  radA Streptococcus pneumoniae R6

48.526

95.662

0.464
  radA Streptococcus pneumoniae TIGR4

48.526

95.662

0.464
  radA Streptococcus mitis SK321

48.526

95.662

0.464

Multiple sequence alignment