Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   E3983_RS13350 Genome accession   NZ_CP038254
Coordinates   2962380..2963033 (+) Length   217 a.a.
NCBI ID   WP_135061361.1    Uniprot ID   A0AAX1EJF9
Organism   Legionella israelensis strain HL-0427-4011     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957380..2968033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3983_RS13330 (E3983_13330) - 2958064..2958240 (-) 177 WP_082636463.1 dodecin family protein -
  E3983_RS13335 (E3983_13335) - 2958496..2960997 (+) 2502 WP_135061357.1 oxidoreductase -
  E3983_RS13340 (E3983_13340) dapB 2961087..2961818 (-) 732 WP_135061359.1 4-hydroxy-tetrahydrodipicolinate reductase -
  E3983_RS13345 (E3983_13345) - 2961849..2962049 (-) 201 WP_082636480.1 hypothetical protein -
  E3983_RS13350 (E3983_13350) rocC 2962380..2963033 (+) 654 WP_135061361.1 ProQ/FinO family protein Regulator
  E3983_RS13355 (E3983_13355) - 2963466..2963951 (-) 486 WP_058501050.1 YajQ family cyclic di-GMP-binding protein -
  E3983_RS13360 (E3983_13360) - 2964036..2964809 (-) 774 WP_245183435.1 SDR family NAD(P)-dependent oxidoreductase -
  E3983_RS13365 (E3983_13365) - 2964889..2965491 (+) 603 WP_135061365.1 short chain dehydrogenase -
  E3983_RS13370 (E3983_13370) - 2965562..2965903 (-) 342 WP_058501047.1 hypothetical protein -
  E3983_RS13375 (E3983_13375) - 2966221..2967156 (-) 936 WP_135061367.1 glutathione S-transferase family protein -
  E3983_RS13380 (E3983_13380) wrbA 2967195..2967800 (-) 606 WP_342353803.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24884.26 Da        Isoelectric Point: 10.5785

>NTDB_id=352786 E3983_RS13350 WP_135061361.1 2962380..2963033(+) (rocC) [Legionella israelensis strain HL-0427-4011]
MRKQELHPRTAVINRSQKNKSKQARLNALRWLADRFPEAFNNKLRIRPLKKGIMNDLLEYAEEAAEAGISKSKLREAVIL
FTRRIDYLACLKAQETRIDLHGNAIDKVSSEEAERAAIKIKRRVEKSARNARKTNAKAPMEPYYYNNSTDHHDSYRSSAE
EHEFPVYPSRSSYNNAGQNSKTPSVVIKHKASKSYDPEAVARLKEKLGLSKRESTTK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=352786 E3983_RS13350 WP_135061361.1 2962380..2963033(+) (rocC) [Legionella israelensis strain HL-0427-4011]
ATGAGAAAACAGGAACTGCACCCCCGAACTGCAGTGATCAACCGAAGCCAAAAAAATAAATCAAAACAGGCTCGTTTAAA
CGCCTTGCGATGGCTTGCCGATCGGTTTCCCGAAGCATTTAACAATAAACTACGCATTCGCCCTCTTAAAAAAGGCATAA
TGAATGATCTGCTGGAATATGCAGAAGAAGCCGCTGAGGCGGGAATTTCCAAGAGCAAGTTACGTGAAGCGGTGATTCTT
TTCACCCGCCGAATCGACTATTTAGCTTGCCTTAAAGCCCAGGAAACCCGTATTGATCTACATGGCAACGCTATAGATAA
GGTATCCAGTGAAGAAGCAGAACGTGCGGCGATAAAAATCAAAAGGCGTGTGGAGAAAAGTGCCAGAAATGCACGAAAAA
CAAATGCAAAAGCCCCAATGGAACCCTATTATTATAATAATTCCACAGATCATCACGACAGTTACAGATCTTCTGCTGAA
GAACATGAATTTCCTGTCTATCCATCCCGTTCTTCCTACAACAACGCAGGACAAAACAGCAAAACCCCATCTGTTGTAAT
TAAACATAAAGCCAGCAAGTCATATGATCCTGAAGCCGTAGCAAGGCTTAAGGAAAAGTTGGGTTTATCAAAACGGGAAT
CCACCACCAAGTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

62.613

100

0.641

Multiple sequence alignment