Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GOM48_RS05210 Genome accession   NZ_CP046523
Coordinates   1022418..1023488 (+) Length   356 a.a.
NCBI ID   WP_235096338.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017418..1028488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS05190 (GOM48_05210) - 1017713..1018492 (+) 780 WP_235096334.1 ribonuclease HII -
  GOM48_RS05195 (GOM48_05215) - 1018505..1020055 (+) 1551 WP_235096335.1 ClC family H(+)/Cl(-) exchange transporter -
  GOM48_RS05200 (GOM48_05220) - 1020773..1021540 (-) 768 WP_235096336.1 hypothetical protein -
  GOM48_RS05205 (GOM48_05225) - 1021656..1022051 (+) 396 WP_235096337.1 DUF6680 family protein -
  GOM48_RS05210 (GOM48_05230) xerS 1022418..1023488 (+) 1071 WP_235096338.1 tyrosine recombinase XerS Machinery gene
  GOM48_RS05215 (GOM48_05235) - 1023565..1024206 (-) 642 WP_235096339.1 hypothetical protein -
  GOM48_RS05220 (GOM48_05240) - 1024310..1025299 (-) 990 WP_070657676.1 lipoate--protein ligase -
  GOM48_RS05225 (GOM48_05245) lpdA 1025495..1027198 (-) 1704 WP_265324765.1 dihydrolipoyl dehydrogenase -
  GOM48_RS05230 (GOM48_05250) - 1027245..1028288 (-) 1044 WP_235096340.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41249.30 Da        Isoelectric Point: 9.6031

>NTDB_id=352704 GOM48_RS05210 WP_235096338.1 1022418..1023488(+) (xerS) [Streptococcus oralis strain SOD]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPNQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGFPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=352704 GOM48_RS05210 WP_235096338.1 1022418..1023488(+) (xerS) [Streptococcus oralis strain SOD]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTCCCCTATAGTTTTACAACCTTGTACGAATACCTTAAGGAATATGATCGATTTTTTAGCTGGGTTTTAG
AGTCTGGGATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCGGTTTTGGAAAACATGTCAAAGAAAGATATGGAA
TCCTTTATCCTTTATCTACGAGAACGACCTTTGCTGAATGCTAATACAACCAAACAAGGTGTTTCACAGACAACTATCAA
TCGGACCTTATCAGCTCTTTCCAGTCTTTACAAGTATCTAACTGAGGAAGTTGAAAACGACCAAGGGGAGCCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACTAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAACATCAAGCAAAAG
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTGACTTATATCGACCAAGAGTATCCAAACCAGCTCTCAAATCGTGCCTT
ATCCTCCTTTAATAAAAATAAGGAACGTGATTTGGCCATTATCGCCCTTCTCCTAGCGTCTGGTGTCCGCCTATCTGAAG
CTGTTAATCTGGATCTAAGAGATCTCAATCTCAAAATGATGGTTATCGATGTCACTCGAAAAGGTGGCAAACGTGATTCT
GTCAATGTCGCTGCCTTTGCCAAGCCTTACCTAGAGAATTATCTCGCCATTCGAAATCAACGATATAAGACTGAAAAGAC
GGATACAGCACTCTTTCTGACACTTTACAGAGGTTTTCCCAATCGTATCGATGCTTCCAGTGTTGAAAAAATGGTTGCTA
AATACTCAGAGGATTTCAAAGTGCGTGTAACACCCCATAAACTACGCCATACCCTAGCAACTAGGCTCTATGATGCAACT
AAATCGCAAGTTTTAGTTAGCCATCAGCTAGGTCACGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAAAATGCTTTGGATAGTTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986

Multiple sequence alignment