Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GOM48_RS05160 Genome accession   NZ_CP046523
Coordinates   1007955..1011230 (+) Length   1091 a.a.
NCBI ID   WP_235096329.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002955..1016230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS05130 (GOM48_05150) - 1003291..1004169 (+) 879 WP_235096323.1 sensor histidine kinase -
  GOM48_RS05135 (GOM48_05155) - 1004208..1004960 (-) 753 WP_235096324.1 ABC transporter permease -
  GOM48_RS05140 (GOM48_05160) - 1004971..1005879 (-) 909 WP_235096325.1 ATP-binding cassette domain-containing protein -
  GOM48_RS05145 (GOM48_05165) - 1006019..1006828 (-) 810 WP_235096326.1 Cof-type HAD-IIB family hydrolase -
  GOM48_RS05150 (GOM48_05170) - 1006975..1007436 (+) 462 WP_235096327.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM48_RS05155 (GOM48_05175) - 1007429..1007848 (+) 420 WP_235096328.1 EVE domain-containing protein -
  GOM48_RS05160 (GOM48_05180) rexB 1007955..1011230 (+) 3276 WP_235096329.1 ATP-dependent nuclease subunit B Machinery gene
  GOM48_RS05165 (GOM48_05185) rexA 1011227..1014880 (+) 3654 WP_235096330.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GOM48_RS05170 (GOM48_05190) - 1014898..1016076 (+) 1179 WP_235096331.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124656.41 Da        Isoelectric Point: 5.9737

>NTDB_id=352702 GOM48_RS05160 WP_235096329.1 1007955..1011230(+) (rexB) [Streptococcus oralis strain SOD]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAGLDPKDLRVYGAIKQDPQFIQQLVELYHEMTTAQMNFLDLESLTDEDKRADLLLIFEKVTAYLNQ
NQLAQGSQLSHLIEAIENGKVSSDFSQIALVIDSFTRFSAEEERVVDLLHRKGVEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDLSQSHEKMDSFDKASRLLESSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQQLH
DNPELSYKHFRILLGDVASYELSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDMINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPAFQQTFTKSHHGKFDLERLNAIRLRVLAPLETLFASRKQRTENLLQKWNAFLKNAALSK
QMQELTATMELLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLFNESE
SKESAYLQELIHFGFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQAGSSENEQDVTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALFPANKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPD
ENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKKEGEQNFFGAMYLEMAEPVQSLLTVKSLA
GAVAEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNSHLYKKAAEKILQGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLEQADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=352702 GOM48_RS05160 WP_235096329.1 1007955..1011230(+) (rexB) [Streptococcus oralis strain SOD]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTCTAACCAGAGAGGCAGAAGAGCTAGTTGCTGCAGG
CAAGCGTGTTTTCTACATCGCACCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTTGCTCAGATGGCTCGTTACCTGGTCTTGAATGATTTGCCAACTAAGACGAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAATGCCTTGCGGGACTCGATCCCAAGGACTTACGTGTTTATGGTGC
TATTAAGCAGGATCCTCAATTTATCCAGCAGTTGGTTGAACTTTATCATGAGATGACGACTGCTCAGATGAACTTTTTAG
ACTTGGAAAGTTTGACTGATGAGGATAAACGAGCAGATTTACTCTTGATTTTTGAGAAAGTTACTGCCTATCTTAATCAA
AACCAGTTGGCTCAGGGGAGTCAGTTGTCCCATTTGATTGAGGCTATTGAAAATGGCAAGGTAAGTAGTGATTTCAGTCA
GATTGCCTTGGTTATTGATAGCTTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTAGATCTACTCCATCGAAAAGGTG
TCGAGATTGTCATTGGTGCTTATGCAAGCAAGAAGGCCTATACCAGTCCGTTCACTGAAGGGAATCTCTACCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCGCAAGACCTTTCTCAATCTCATGAAAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGATTTTTCAGAACTCACTTTAGATGTCGATGAGAAGGACCGTG
AAAATTTGCAAATCTGGTCTTGCTTGACGCAAAAAGAGGAGTTGGAATTGGTAGCCCGCAGCATCCGTCAACAATTACAT
GACAATCCAGAACTGAGTTACAAGCATTTCCGTATTCTCTTGGGTGATGTGGCTTCTTACGAGTTATCACTGAAAACCAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCACCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTTCGTCAGGAGGATATGATTAATCTTCTTAGAACTGGTTTGTATACTGACCTT
AGCCAAGCGGATATTGATGCCTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTCCAGCAGACCTT
CACCAAATCCCACCACGGAAAATTTGATTTGGAACGTTTGAACGCAATTCGTCTGCGCGTTTTGGCGCCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAGGACTGAAAATCTCTTGCAAAAGTGGAATGCTTTTTTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACTATGGAACTTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACCGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGATTTCCTAGCCTTGCTCCATTCTGGGATGA
GTTTGTCCCAGTATCGCACCATTCCAGCGACAGTGGACACTGTTCTGGTGCAGAGTTACGATCTGATTGCCCCTCTGACC
GCTGACTTTGTCTATGCCATCGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCGCAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCTTTAGTCAATGCTGCCCGTAAGCAGTTGGTCTTGTCGGCTCCAAGTCTTTTTAACGAAAGTGAA
AGTAAAGAATCTGCCTATCTTCAAGAGCTGATCCATTTTGGATTTAGTCGGAAAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGATATGGGTTCATATCACAGTCTCTTGTCTAGCCTTGTTGCCTATCATCAGCAGGCAGGTTCTAGTGAAA
ATGAGCAAGATGTGACCTTTGTCAAGGTTCTAGCACGTGTGATGGGGAAAAAACTTGATCAGAAAGGTCTTACCAATCCT
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAAAAAGAGACCTTGCAGGCTCTTTTTCCAGCTAACAAAGAGTTTTA
CCTATCTACCTCTGGTTTGACGGAGTTTTACCGCAATGAATATAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTTCGTCCGGATGCTCGCAGTCATGGGAATTTCTTGCACCGTATTTTTGAACGTGCCTTGAAACTGCCTGAT
GAAAATCCGTTTGACCAGCGTTTGGAACAAGCCATCAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTGCTTGATGTTGCGCGGACAACTGGCCATATTCTCCGCCATAATCCAG
CCATTGAAACCATCCAAGAGGAGGCAACATTTGGTGGCAAGGACCAGGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTACGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCGCTAGGAGTAGTGGACTACAAGTCTAGTTT
GACCCAGTTCCAGTTTCCTCATTTCTTTAATGGTTTAAATTCCCAGTTGCCAACCTATCTTGCTGCCCTAAAAAAAGAAG
GGGAACAGAACTTTTTCGGCGCTATGTACCTAGAAATGGCAGAGCCTGTCCAATCTCTGTTGACCGTTAAGAGTTTGGCT
GGAGCAGTAGCAGAAGCCAGCAAGTCAATGAAATACCAGGGGCTCTTTTTAGAAAAAGAAAGTAGTCATTTGGGAGAATT
TTACAACAAAAACAAGGCCAATCAGCTGACAGATGAGGAGTTCCAGCTCTTACTAGACTATAATTCCCATCTTTACAAGA
AAGCAGCTGAGAAGATTTTACAAGGCCAGTTCGCTATCAATCCCTACACAGAGAACGGCAGAAGTATTGCCCCATACGTC
CAGCAACACCAAGCCATCACTGGATTTGAAGCCAATTATCACTTGGGACAAGCCCGTTTCCTTGAGAAGTTAGAACAGGC
TGATGGCAAGCGTCTGGTCGGAGAAAAGCTCAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.376

100

0.904