Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ES298_RS02765 Genome accession   NZ_CP038253
Coordinates   542980..543246 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   A0A098Z1L6
Organism   Streptococcus pneumoniae strain TVO_1901929     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 542451..542675 542980..543246 flank 305


Gene organization within MGE regions


Location: 542451..543246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES298_RS02760 (ES298_02920) - 542451..542854 (+) 404 Protein_551 helix-turn-helix domain-containing protein -
  ES298_RS02765 (ES298_02925) HI0659 542980..543246 (+) 267 WP_001810535.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=352687 ES298_RS02765 WP_001810535.1 542980..543246(+) (HI0659) [Streptococcus pneumoniae strain TVO_1901929]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=352687 ES298_RS02765 WP_001810535.1 542980..543246(+) (HI0659) [Streptococcus pneumoniae strain TVO_1901929]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z1L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment