Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GOM48_RS02400 Genome accession   NZ_CP046523
Coordinates   490806..491594 (+) Length   262 a.a.
NCBI ID   WP_125394844.1    Uniprot ID   A0ABW0Y2A6
Organism   Streptococcus oralis strain SOD     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 485806..496594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS02385 (GOM48_02375) - 485921..486676 (-) 756 WP_084852572.1 hypothetical protein -
  GOM48_RS02390 (GOM48_02380) - 487282..488598 (-) 1317 WP_235098131.1 FAD-containing oxidoreductase -
  GOM48_RS02395 (GOM48_02385) - 488946..490523 (+) 1578 WP_235098133.1 DEAD/DEAH box helicase -
  GOM48_RS02400 (GOM48_02390) codY 490806..491594 (+) 789 WP_125394844.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GOM48_RS02405 (GOM48_02395) - 491594..492169 (+) 576 WP_084973289.1 cysteine hydrolase family protein -
  GOM48_RS02415 (GOM48_02405) - 492603..493880 (+) 1278 WP_235098135.1 ABC transporter permease -
  GOM48_RS02420 (GOM48_02410) vex2 494008..494655 (+) 648 WP_000173741.1 ABC transporter ATP-binding subunit Vex2 -
  GOM48_RS02425 (GOM48_02415) vex3 494706..496085 (+) 1380 WP_235098136.1 ABC transporter permease subunit Vex3 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29693.00 Da        Isoelectric Point: 5.0834

>NTDB_id=352686 GOM48_RS02400 WP_125394844.1 490806..491594(+) (codY) [Streptococcus oralis strain SOD]
MAHLLEKTRKITSILKRSEEQMQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKTFPDDYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=352686 GOM48_RS02400 WP_125394844.1 490806..491594(+) (codY) [Streptococcus oralis strain SOD]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCAATTTTAAAACGCTCAGAAGAGCAAATGCAGGATGAACTTCC
CTACAATGCCATTACACGTCAACTAGCAGACATTATTGATTGCAATGCCTGCATTGTCAATAGCAAGGGCCGTCTTTTGG
GCTACTTTATGCGCTATAAAACTAATACAGACCGTGTAGAGCAGTTTTTCCAAACCAAGACGTTCCCAGATGACTATGTA
CAAGGGGCAAACATGATCTATGATACAGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTTCCTGTAGAGAGCCG
TGCGGATTTTCCAGATGGTTTGACAACCATTGCTCCCATTCATGTATCAGGGATTCGCCTAGGTTCCTTGATTATTTGGC
GTAATGACAAGAAATTTGAAGATGAGGATTTGATTCTTGTTGAGATTGCGAGCACAGTGGTAGGGATTCAACTCTTGAAC
TTCCAGCGTGAAGAAGATGAGAAAAATATCCGTCGTCGTACTGCTGTAACCATGGCAGTCAATACCCTCTCCTACTCAGA
ACTTCGTGCTGTTTCAGCTATTTTAGCTGAGCTGGATGGAAATGAAGGACAATTGACTGCATCGGTCATTGCAGACCGTA
TTGGAATCACGCGTTCAGTGATCGTCAATGCTCTCCGTAAGCTAGAGTCGGCAGGAATTATTGAAAGCCGTTCACTAGGA
ATGAAGGGAACATATCTCAAGGTATTGATTTCAGATATCTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.977

100

0.63
  codY Bacillus subtilis subsp. subtilis str. 168

49.593

93.893

0.466

Multiple sequence alignment