Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GOM48_RS02200 Genome accession   NZ_CP046523
Coordinates   448094..450316 (+) Length   740 a.a.
NCBI ID   WP_235098721.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443094..455316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS02170 (GOM48_02160) - 443307..444041 (+) 735 WP_025168406.1 ABC transporter ATP-binding protein -
  GOM48_RS02175 (GOM48_02165) - 444041..444691 (+) 651 WP_235098719.1 ABC-2 transporter permease -
  GOM48_RS02180 (GOM48_02170) - 444994..445653 (-) 660 WP_235098080.1 amino acid ABC transporter permease -
  GOM48_RS02185 (GOM48_02175) - 445663..446340 (-) 678 WP_000131156.1 amino acid ABC transporter permease -
  GOM48_RS02190 (GOM48_02180) - 446353..447147 (-) 795 WP_235098082.1 transporter substrate-binding domain-containing protein -
  GOM48_RS02195 (GOM48_02185) - 447158..447916 (-) 759 WP_235098084.1 amino acid ABC transporter ATP-binding protein -
  GOM48_RS02200 (GOM48_02190) recJ 448094..450316 (+) 2223 WP_235098721.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GOM48_RS02205 (GOM48_02195) - 450490..452151 (+) 1662 WP_223326183.1 ribonuclease J -
  GOM48_RS02210 (GOM48_02200) - 452221..453000 (+) 780 WP_235098086.1 alpha/beta hydrolase -
  GOM48_RS02215 (GOM48_02205) - 453105..453806 (+) 702 WP_235098089.1 M57 family metalloprotease -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82636.04 Da        Isoelectric Point: 4.2672

>NTDB_id=352683 GOM48_RS02200 WP_235098721.1 448094..450316(+) (recJ) [Streptococcus oralis strain SOD]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GEDILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
IMVQYGLEMLGHTQRIGLQEMLDVPGIAANEVTEETVGFQLAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKEVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADAAGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFRVESARTMGAGNAHLKLKITKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAALPEGVPVLDFAGELPDLATSEAVVVKNIPEDITLLKTVFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FTKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREISESQIYQNLKQIVKN
QEMMALGTVQEMYDFLMEEN

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=352683 GOM48_RS02200 WP_235098721.1 448094..450316(+) (recJ) [Streptococcus oralis strain SOD]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGATTATTATTTGAGAGAGGGATTCAGGATGAAGAAAGTCTAAAGAAGTTTTTAGAACCTT
CCTTGGAGGACTTGCATGATCCCTACCTGCTCCATGATATGGATAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAGACATTCTCATCTATGGAGACTACGATGCGGATGGTATGACTTCAGCGTCGATTGTTAAGGAAAGTTTGGAACA
GCTTGGCGCGGAATGCCGTGTTTATTTGCCAAATCGTTTTACCGATGGCTATGGACCAAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAAGGGATTTCCTTGATTGTGACAGTGGATAATGGAGTTGCTGGCCATGAAGCCATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACCGACCACCATTCCATGCCTGAAACCCTTCCTGATGCCTATGCTATTGTTCACCC
TGAGCATCCGGATGCGGACTATCCTTTCAAATATCTAGCTGGTTGTGGAGTGGCTTTCAAGCTGGCTTGTGCCCTTTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTCGCTATCGGTACTATTGCAGATATGGTGAGCTTGACAGATGAAAACCGT
ATCATGGTTCAATATGGTCTGGAAATGTTGGGACATACTCAGCGTATTGGTCTACAAGAAATGCTGGACGTGCCTGGGAT
TGCTGCTAATGAAGTCACAGAAGAAACGGTTGGCTTTCAGCTTGCCCCTCGTTTAAATGCCTTGGGGCGCTTGGATGATC
CCAACCCTGCCATTGATTTGCTGACTGGATTTGACGACGAGGAAGCTCATGAGATTGCCCTCATGATTCACCAGAAAAAC
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTATGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGGAGGTTCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGAGTTCTAGGTATCGTGGCTGGTCGTTTGCTGGAAGAATTGGGGCAGACTGTTATCG
TTCTTAATATAGAAGATGGTCGTGCCAAGGGCAGTGCACGCAGTGTGGAAGCGGTCGATATTTTTGAAGCTCTGGATCCC
CATCGAGACCTCTTCATCGCATTTGGTGGCCATGCTGGCGCAGCAGGAATGACACTGGAGGTTGAGAAACTTTCAGATTT
ATCTCAGGTCTTGGAAGACTATATCCGTGAAAAAGGCGCAGATGCTGCTGGCAAGAACAAGTTAAATCTAGATGAAGAGT
TGGATTTGGAGACTCTTAGTTTAGAAACGGTTAAAAGCTTTGAACGCTTGGCACCTTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCGTGTCGAAAGTGCTCGTACCATGGGAGCGGGCAATGCCCACCTCAAACTAAAGATCAC
CAAGGGTGAGGCGAGTTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCAACAGAGTTTGCTCAAACAAAAAACCTAG
AATTAGCAGTCACCCTGTCTGTCAATCAATGGAATGGTCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGCGTTCAACTCTTTAATATTCGTGGGAAGAACGCAGCCTTGCCAGAAGGGGTTCCAGTCTTGGATTTTGCTGGAGAATT
GCCAGATCTAGCGACCAGTGAAGCTGTGGTTGTGAAAAACATTCCTGAGGACATTACCCTGCTTAAGACCGTTTTTCAGG
AACAAAATTTCTCTGCGGTCTATTTCAAAAATGACATTGACAAGGCCTATTATCTAACAGGTTATGGGACTAGAGAGCAG
TTTACTAAATTGTACAAGACCATTTACCAGTTTCCGGAATTTGATATTCGATACAAGTTGAAAGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATTCAAGTCTTCGAAGAACTAGGCTTTGTGACGATCAAAGACGGTGTCA
TGACAGTCAATAAAGAAGCGCCAAAAAGGGAAATTAGTGAAAGTCAGATTTACCAAAATCTCAAACAAATTGTAAAAAAT
CAAGAAATGATGGCGTTGGGTACGGTGCAAGAAATGTATGATTTTTTGATGGAAGAAAACTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(84-228)

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.264

99.865

0.951
  recJ Bacillus subtilis subsp. subtilis str. 168

37.176

100

0.388

Multiple sequence alignment