Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GOM48_RS01585 Genome accession   NZ_CP046523
Coordinates   329599..331968 (-) Length   789 a.a.
NCBI ID   WP_235097942.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 324599..336968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01560 (GOM48_01550) liaF 325181..325879 (+) 699 WP_223326118.1 cell wall-active antibiotics response protein LiaF -
  GOM48_RS01565 (GOM48_01555) - 325876..326871 (+) 996 WP_235097935.1 sensor histidine kinase -
  GOM48_RS01570 (GOM48_01560) vraR 326885..327517 (+) 633 WP_235097937.1 response regulator transcription factor Regulator
  GOM48_RS01575 (GOM48_01570) - 327518..328175 (+) 658 Protein_277 DNA alkylation repair protein -
  GOM48_RS01580 (GOM48_01575) tig 328268..329551 (+) 1284 WP_235097939.1 trigger factor -
  GOM48_RS01585 (GOM48_01580) recD/recD2/recDB 329599..331968 (-) 2370 WP_235097942.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GOM48_RS01590 (GOM48_01585) lepB 332117..332731 (-) 615 WP_125424831.1 signal peptidase I -
  GOM48_RS01595 (GOM48_01590) rnhC 332735..333616 (-) 882 WP_235097943.1 ribonuclease HIII -
  GOM48_RS01600 (GOM48_01595) zapA 333703..334005 (+) 303 WP_235097945.1 cell division protein ZapA -
  GOM48_RS01605 (GOM48_01600) - 334002..334550 (+) 549 WP_235097946.1 CvpA family protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88658.59 Da        Isoelectric Point: 4.5187

>NTDB_id=352676 GOM48_RS01585 WP_235097942.1 329599..331968(-) (recD/recD2/recDB) [Streptococcus oralis strain SOD]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTKKGLVKYFSSSHFKGIGLKTAQKIVDIYGENTIDEILEHPEKLENIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKNQDLETIQKH
IATVEEELGIQYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIMSNHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCYYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIENNIEESKQAFSETATASDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=352676 GOM48_RS01585 WP_235097942.1 329599..331968(-) (recD/recD2/recDB) [Streptococcus oralis strain SOD]
ATGGAAGTTTATTTTTCAGGCACTATTGAACGCATTATTTTTGAAAATCCCAGCAATTTTTATCGTATCCTCCTCTTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCTGACGTGATTGAGGGCG
AAGACTACACCTTTTGGGGACAAATCGTTCAACACTCCAAGTACGGAGAACAACTGCAAATCAGCCGTTATGAGCGGGCA
AAACCAACTAAAAAAGGGCTAGTTAAGTACTTTTCGAGTAGCCACTTCAAGGGAATTGGTCTCAAAACGGCCCAAAAAAT
CGTTGATATCTATGGTGAAAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAAACATTGCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTCGTCTCTACACTTCGTCTTAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCTAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACGCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTCGAGGATATCAAGGGATTGGGTTTTACCATTGCAGACCAATTAGCTGCCGAACTAGGTATCGAAAGCCAAG
CTCCTGAGCGCTTCCGTGCTGGCCTTGTCCATAGTCTCTTTCAGGGCTGTATGGATACGGGCGATACCTACATGGAAGCC
CGAGATTTGCTGGAACAGACCCTGACTCTCCTCGAGTCTTCCCGACCCGTAGAACTGGATCCCAGCCAAGTAGCCCAAGA
ACTCTCCTACCTCATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCCGAAG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAAAATCAGGATTTAGAAACCATTCAAAAGCAT
ATCGCTACTGTTGAGGAAGAATTAGGTATCCAATACGATAGCATCCAAAAACAGGCTATCTGCGATGCCATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACAGGTAAAACCACTGTTATCAATGGGATTATCGCTGTTTATGCTCTCTTAG
AGGGACTTGACCTCAGGAAGAAAAGCAACTTACCAATTCTTCTCGCTGCCCCAACTGGTCGAGCAGCTCGACGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACATCGCCATTTGGGAATGACGGGAGATGATGATACTAGTCATCTGGAAGA
TTATCTGGATGCTGACTTTATCATTGTAGATGAGTTTTCTATGGTAGATACTTGGCTAGCTAACCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATCCTCATCGTGGGTGATAGCGACCAGCTACCTTCTGTTAGTCCTGGACAAGTCCTGGCTGAC
CTGCTCCAAATACCTCTGATCCCTCAGACTCGCTTGGAGCGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACCTT
AGCGAGTCAGATTCGACAGGGAATCTTGCCAGCCGACTTTACCCAGAAAAAGGCCGATCGCTCCTACTTTGAAATCATGA
GTAACCATATCCCTGCAACCATTGAGAAAATTCTTGGTGCTGCCCTCAGAAGTGGCATTCCAGCTCGTGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTTAGCTTTGAAGCAACTCAGTGTTACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAATGGAGACCTAGGCTACATCACAGATTTGATTCCTGGAAAATACACTGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGACGGCAATGAGGTCGTCTACCCACGTAACGAATGGTACAAGATTCGACTGGCCTATGCCATGAGCAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAACGCAATC
TCATCTACACAGCTATCACACGGGCCAAGAGCAAGCTTATCCTTCTTGGTGAATTACAGGCCTTTGACTATGCAGTCAAG
CATATCGGGACTGCTCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAAATAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACAATCCTACATCCTTACCGAGGAAAACTGGTCTAGTATTCCCG
CTATGATTGGGATTACAGACGCAGACCTTAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.287

95.311

0.403

Multiple sequence alignment