Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GOM48_RS01495 Genome accession   NZ_CP046523
Coordinates   313116..313712 (-) Length   198 a.a.
NCBI ID   WP_125415673.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 308116..318712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01490 (GOM48_01480) pbp1a 310972..313119 (-) 2148 WP_235097916.1 penicillin-binding protein PBP1A -
  GOM48_RS01495 (GOM48_01485) recU 313116..313712 (-) 597 WP_125415673.1 Holliday junction resolvase RecU Machinery gene
  GOM48_RS01500 (GOM48_01490) - 313792..314319 (+) 528 WP_235097917.1 DUF1273 domain-containing protein -
  GOM48_RS01505 (GOM48_01495) gpsB 314389..314718 (+) 330 WP_000146526.1 cell division regulator GpsB -
  GOM48_RS01515 (GOM48_01505) - 315204..316361 (+) 1158 WP_235097919.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GOM48_RS01520 (GOM48_01510) mapZ 316374..317822 (+) 1449 WP_235097921.1 cell division site-positioning protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23032.39 Da        Isoelectric Point: 9.7126

>NTDB_id=352673 GOM48_RS01495 WP_125415673.1 313116..313712(-) (recU) [Streptococcus oralis strain SOD]
MVNYPHKLSSQKRQAPPSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDTGQK
SMPLGYIRENGYRIEPGAFPQIPYLDVIKEHLLGGKIR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352673 GOM48_RS01495 WP_125415673.1 313116..313712(-) (recU) [Streptococcus oralis strain SOD]
ATGGTCAACTATCCACATAAACTTTCATCACAGAAGAGACAAGCGCCCCCGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAACGCTACGAACGACTACTATTTGTCGCATGGGTTAGCAGTTATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCTTATTTTAGACAGGCCTCA
ACGACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATCCC
GATGAAGAATTTCCATCTCCATCAGATCCAACACATGGAACAAGTTCTTGCCCAGCAAGGAATCTGCTTTGTCCTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCCATTGATTTGATTCGTTTCTATCATCAAGATACGGGACAAAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCACAGATTCCCTATCTCGACGT
TATCAAAGAACATTTACTAGGTGGTAAAATAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.716

99.495

0.475

Multiple sequence alignment