Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AACI_RS14520 Genome accession   NC_013205
Coordinates   3000566..3001036 (-) Length   156 a.a.
NCBI ID   WP_012812132.1    Uniprot ID   C8WV95
Organism   Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2995566..3006036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACI_RS14490 (Aaci_2922) - 2996655..2997347 (-) 693 WP_012812125.1 response regulator -
  AACI_RS14495 (Aaci_2923) - 2997362..2997835 (-) 474 WP_012812126.1 hypothetical protein -
  AACI_RS14500 (Aaci_2924) dnaB 2997832..2999211 (-) 1380 WP_012812127.1 replicative DNA helicase -
  AACI_RS14505 (Aaci_2925) rplI 2999220..2999663 (-) 444 WP_012812128.1 50S ribosomal protein L9 -
  AACI_RS14510 (Aaci_2926) - 2999759..3000070 (-) 312 WP_245530641.1 MazG-like family protein -
  AACI_RS14515 (Aaci_2928) rpsR 3000257..3000487 (-) 231 WP_012812131.1 30S ribosomal protein S18 -
  AACI_RS14520 (Aaci_2929) ssbA 3000566..3001036 (-) 471 WP_012812132.1 single-stranded DNA-binding protein Machinery gene
  AACI_RS14525 (Aaci_2930) rpsF 3001054..3001341 (-) 288 WP_012812133.1 30S ribosomal protein S6 -
  AACI_RS14530 (Aaci_2931) ychF 3001604..3002704 (-) 1101 WP_012812134.1 redox-regulated ATPase YchF -
  AACI_RS14535 (Aaci_2933) - 3003070..3005103 (-) 2034 WP_012812135.1 molybdopterin-dependent oxidoreductase -
  AACI_RS14540 (Aaci_2934) - 3005075..3005299 (-) 225 WP_012812136.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17295.20 Da        Isoelectric Point: 4.6344

>NTDB_id=35266 AACI_RS14520 WP_012812132.1 3000566..3001036(-) (ssbA) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446]
MLNRVILIGRLTADPELRYTNNGTAVASFTLAVDRMRSGPNGERQTDFINVVVWQKQAEIVAQYLQKGRLAAVDGRLQIR
SYDNRDGQRVRVAEVVAETVRFLDRGPDQAQGSGYSAAGAQTRQQRPTPSSAPPFEDDPFADDSQLIDISEDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=35266 AACI_RS14520 WP_012812132.1 3000566..3001036(-) (ssbA) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446]
ATGCTGAACCGAGTGATTCTGATCGGCCGCCTGACGGCGGATCCGGAATTGCGATACACCAACAACGGCACGGCCGTCGC
GTCGTTCACGCTCGCCGTGGACCGCATGCGATCTGGACCGAACGGTGAACGCCAGACCGATTTCATCAACGTCGTGGTGT
GGCAGAAGCAGGCCGAGATCGTGGCGCAATATCTCCAGAAGGGGAGACTCGCGGCGGTCGACGGCAGGCTGCAGATCCGG
AGCTACGACAATCGCGACGGGCAGCGCGTTCGCGTGGCCGAAGTGGTCGCCGAAACGGTGAGGTTCCTGGACCGCGGTCC
GGATCAGGCCCAGGGGTCGGGCTACAGTGCGGCCGGCGCGCAAACTCGGCAGCAGCGGCCGACGCCTTCGTCGGCGCCTC
CGTTTGAAGACGATCCGTTCGCGGATGACAGTCAGTTGATCGATATCTCCGAAGATGATCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8WV95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52

100

0.583
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.5
  ssb Glaesserella parasuis strain SC1401

31.016

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.271

68.59

0.365

Multiple sequence alignment