Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   GE024_RS06235 Genome accession   NZ_CP046521
Coordinates   1237518..1237997 (-) Length   159 a.a.
NCBI ID   WP_093998940.1    Uniprot ID   A0A3P5YBD5
Organism   Streptococcus canis strain HL_100     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1232518..1242997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS11425 (GE024_06225) - 1232606..1233121 (-) 516 WP_307761778.1 transposase -
  GE024_RS06220 (GE024_06230) fbp54 1233348..1235000 (+) 1653 WP_093998942.1 Rqc2 family fibronectin-binding protein Fbp54 -
  GE024_RS06225 (GE024_06235) - 1235056..1236303 (-) 1248 WP_093998941.1 lipopolysaccharide assembly protein LapB -
  GE024_RS06230 (GE024_06240) - 1236293..1237474 (-) 1182 WP_003043899.1 AI-2E family transporter -
  GE024_RS06235 (GE024_06245) mutX 1237518..1237997 (-) 480 WP_093998940.1 8-oxo-dGTP diphosphatase Machinery gene
  GE024_RS06240 (GE024_06250) - 1238086..1239105 (+) 1020 WP_093998939.1 lactonase family protein -
  GE024_RS06245 (GE024_06255) - 1239161..1239352 (+) 192 WP_093998938.1 hypothetical protein -
  GE024_RS06250 (GE024_06260) rfbB 1239729..1240775 (-) 1047 WP_093998937.1 dTDP-glucose 4,6-dehydratase -
  GE024_RS06255 (GE024_06265) - 1241003..1241596 (-) 594 WP_093998936.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  GE024_RS06260 (GE024_06270) rfbA 1241596..1242465 (-) 870 WP_003043910.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18732.03 Da        Isoelectric Point: 4.3727

>NTDB_id=352597 GE024_RS06235 WP_093998940.1 1237518..1237997(-) (mutX) [Streptococcus canis strain HL_100]
MTQLATICYIDNGDALLLLHRNKKENDVHEGKWISVGGKLEAGETPDECARREILEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTEFEGELISDEESREGTLEWVPYDQVLEKPTWEGDYDIFKWILEDRPFFSAKFTYDQNNQLIDKSVTFYK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=352597 GE024_RS06235 WP_093998940.1 1237518..1237997(-) (mutX) [Streptococcus canis strain HL_100]
ATGACCCAATTAGCAACCATTTGTTACATAGATAATGGCGATGCTTTGCTGTTGTTGCACCGCAATAAAAAAGAAAATGA
TGTCCACGAAGGCAAGTGGATTTCCGTTGGGGGTAAGCTTGAAGCAGGTGAAACCCCAGACGAGTGTGCCCGCCGTGAAA
TTTTAGAAGAAACTCATTTGACGGTTAAAAAAATGGATTTTAAGGGAATGATTACTTTCCCAGAATTTACCCCTGGTCAT
GATTGGTACACCTATGTGTTTAAAGTAACCGAGTTTGAAGGAGAACTAATCTCAGATGAAGAATCCCGGGAAGGGACCTT
GGAATGGGTGCCTTACGATCAGGTATTGGAAAAACCAACCTGGGAAGGGGACTATGACATTTTTAAATGGATTTTAGAAG
ACCGTCCTTTTTTCTCTGCCAAATTTACTTACGACCAAAACAACCAACTCATTGATAAATCCGTGACGTTTTATAAATGA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5YBD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

100

0.711

Multiple sequence alignment