Detailed information NTG0352584

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GE024_RS03620
• Genome accession: NZ_CP046521
• Coordinates: 709299..710408 (+)
• Length: 369 a.a.
• NCBI ID: WP_003047995.1
• Uniprot ID: A0A2D4DP26
• Organism: Streptococcus canis strain HL_100
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 704299..715408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE024_RS03595 (GE024_03615)	-	704383..705498 (+)	1116	WP_093998514.1	aminotransferase	-
GE024_RS03600 (GE024_03620)	-	705566..706378 (+)	813	WP_093998515.1	transporter substrate-binding domain-containing protein	-
GE024_RS03605 (GE024_03625)	rpsU	706480..706656 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
GE024_RS03610 (GE024_03630)	mscL	706975..707349 (-)	375	WP_003047993.1	large conductance mechanosensitive channel protein MscL	-
GE024_RS03615 (GE024_03635)	dnaG	707476..709290 (+)	1815	WP_093998516.1	DNA primase	-
GE024_RS03620 (GE024_03640)	rpoS	709299..710408 (+)	1110	WP_003047995.1	RNA polymerase sigma factor RpoD	Regulator
GE024_RS03625 (GE024_03645)	-	710686..711024 (+)	339	WP_003047996.1	metal-sulfur cluster assembly factor	-
GE024_RS03630 (GE024_03650)	rfbD	711162..712016 (+)	855	WP_003047997.1	dTDP-4-dehydrorhamnose reductase	-
GE024_RS03635 (GE024_03655)	cps2T	712135..713283 (+)	1149	WP_003047998.1	beta 1-4 rhamnosyltransferase Cps2T	-
GE024_RS03640 (GE024_03660)	-	713280..714218 (+)	939	WP_003047999.1	glycosyltransferase family 2 protein	-
GE024_RS03645 (GE024_03665)	-	714215..715021 (+)	807	WP_093998518.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42216.99 Da
• Isoelectric Point: 4.5491

>NTDB_id=352584 GE024_RS03620 WP_003047995.1 709299..710408(+) (rpoS) [Streptococcus canis strain HL_100]
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKVLAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED

Nucleotide

• Length: 1110 bp

>NTDB_id=352584 GE024_RS03620 WP_003047995.1 709299..710408(+) (rpoS) [Streptococcus canis strain HL_100]
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATTTCCATTACAGATAAGGAGGGCAACCCTTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTGACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGTATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAATTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-85)

3D structure

• AlphaFold DB: A0A2D4DP26

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363