Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E4J95_RS07840 Genome accession   NZ_CP038229
Coordinates   1633408..1634094 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MJ163     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628408..1639094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4J95_RS07820 (E4J95_08180) rpsT 1629331..1629582 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E4J95_RS07825 (E4J95_08185) holA 1629627..1630601 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  E4J95_RS07830 (E4J95_08190) comEC 1630658..1632850 (-) 2193 WP_053520925.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E4J95_RS07835 (E4J95_08195) - 1632855..1633316 (-) 462 WP_000439693.1 ComE operon protein 2 -
  E4J95_RS07840 (E4J95_08200) comEA 1633408..1634094 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  E4J95_RS07845 (E4J95_08205) - 1634134..1634850 (-) 717 Protein_1552 class I SAM-dependent methyltransferase -
  E4J95_RS07850 (E4J95_08210) rsfS 1634853..1635206 (-) 354 WP_001088020.1 ribosome silencing factor -
  E4J95_RS07855 (E4J95_08215) yqeK 1635207..1635791 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E4J95_RS07860 (E4J95_08220) nadD 1635781..1636350 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E4J95_RS07865 (E4J95_08225) yhbY 1636353..1636643 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  E4J95_RS07870 (E4J95_08230) aroE 1636647..1637453 (-) 807 WP_169449283.1 shikimate dehydrogenase -
  E4J95_RS07875 (E4J95_08235) yqeH 1637467..1638567 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=352447 E4J95_RS07840 WP_001788928.1 1633408..1634094(-) (comEA) [Staphylococcus aureus strain MJ163]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=352447 E4J95_RS07840 WP_001788928.1 1633408..1634094(-) (comEA) [Staphylococcus aureus strain MJ163]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment