Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GFX43_RS19150 Genome accession   NZ_CP046448
Coordinates   3723445..3723879 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain ZD01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3718445..3728879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS19135 (GFX43_019135) epsK 3719073..3719924 (-) 852 WP_015382803.1 cyclic-di-GMP receptor EpsK -
  GFX43_RS19140 (GFX43_019140) ephJ 3719905..3720993 (-) 1089 WP_015482816.1 glycosyl hydrolase family 8 -
  GFX43_RS19145 (GFX43_019145) topB 3721197..3723380 (-) 2184 WP_015382801.1 DNA topoisomerase III -
  GFX43_RS19150 (GFX43_019150) lrpC 3723445..3723879 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GFX43_RS19155 (GFX43_019155) ydzA 3724064..3724354 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GFX43_RS19160 (GFX43_019160) amj 3724399..3725208 (-) 810 WP_003234394.1 lipid II flippase Amj -
  GFX43_RS19165 (GFX43_019165) ydaG 3725714..3726136 (-) 423 WP_015382800.1 pyridoxamine 5'-phosphate oxidase family protein -
  GFX43_RS19170 (GFX43_019170) ydaF 3726214..3726765 (-) 552 WP_015382799.1 GNAT family protein -
  GFX43_RS19175 (GFX43_019175) lyxE 3726852..3727355 (-) 504 WP_015382798.1 D-lyxose ketol-isomerase -
  GFX43_RS19180 (GFX43_019180) ydaD 3727371..3728231 (-) 861 WP_015382797.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=352441 GFX43_RS19150 WP_003246585.1 3723445..3723879(-) (lrpC) [Bacillus subtilis strain ZD01]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=352441 GFX43_RS19150 WP_003246585.1 3723445..3723879(-) (lrpC) [Bacillus subtilis strain ZD01]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAACTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCTGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment