Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GFX43_RS17780 Genome accession   NZ_CP046448
Coordinates   3462481..3463611 (-) Length   376 a.a.
NCBI ID   WP_015482914.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3457481..3468611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS17735 (GFX43_017735) cotJC 3457547..3458116 (-) 570 WP_003233850.1 spore coat protein CotJC -
  GFX43_RS17740 (GFX43_017740) cotJB 3458131..3458394 (-) 264 WP_003219491.1 spore coat protein CotJB -
  GFX43_RS17745 (GFX43_017745) cotJA 3458378..3458626 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  GFX43_RS17750 (GFX43_017750) yesF 3458753..3459618 (-) 866 Protein_3483 SDR family oxidoreductase -
  GFX43_RS17755 (GFX43_017755) yesE 3459615..3460061 (-) 447 WP_015383031.1 nuclear transport factor 2 family protein -
  GFX43_RS17760 (GFX43_017760) yezE 3460140..3460724 (-) 585 WP_015482917.1 TetR/AcrR family transcriptional regulator -
  GFX43_RS17765 (GFX43_017765) yeeK 3460838..3461305 (-) 468 WP_015482916.1 spore coat protein YeeK -
  GFX43_RS17770 (GFX43_017770) yeeI 3461439..3462158 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GFX43_RS17775 (GFX43_017775) phrH 3462318..3462491 (-) 174 WP_015482915.1 phosphatase RapH inhibitor PhrH -
  GFX43_RS17780 (GFX43_017780) rapC 3462481..3463611 (-) 1131 WP_015482914.1 response regulator aspartate phosphatase RapH Regulator
  GFX43_RS17785 (GFX43_017785) - 3463757..3464917 (-) 1161 WP_015482913.1 lysozyme inhibitor LprI family protein -
  GFX43_RS17790 (GFX43_017790) - 3465073..3465993 (-) 921 WP_015383026.1 DUF5655 domain-containing protein -
  GFX43_RS17795 (GFX43_017795) - 3466006..3466344 (-) 339 WP_015482912.1 hypothetical protein -
  GFX43_RS17800 (GFX43_017800) yeeF 3466511..3468520 (+) 2010 WP_015482911.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43884.14 Da        Isoelectric Point: 5.8846

>NTDB_id=352437 GFX43_RS17780 WP_015482914.1 3462481..3463611(-) (rapC) [Bacillus subtilis strain ZD01]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIENPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HVLQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=352437 GFX43_RS17780 WP_015482914.1 3462481..3463611(-) (rapC) [Bacillus subtilis strain ZD01]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGAACCCGCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATGTTCTTCAAGCCTTGGACATTTATCAAAACAATCCCCTATACAGCATTAGAACCATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTTTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.16

100

0.402
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396